bowtie2_usage {Rbowtie2} | R Documentation

## Print available arguments for bowtie2

### Description

Note that some arguments to the bowtie2 are invalid if they are already handled as explicit function arguments.

### Usage

    bowtie2_usage()

### Value

bowtie2 available arguments and their usage.

### Author(s)

Zheng Wei

### References

Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature methods, 9(4), 357-359.

### Examples

    bowtie2_usage()

[Package Rbowtie2 version 1.8.0 Index]