RNAinteract-package	RNAinteract-package
bindscreens	bindsamples
computePI	computePI
computePValues	computePValues
createCellHTSFromFiles	createCellHTSFromFiles
createRNAinteract	createRNAinteract
createRNAinteractFromFiles	createRNAinteractFromFiles
doublePerturbationGrob	grid.doublePerturbation
embedPCA	embedPCA
endReport	startReport
estimateMainEffect	estimateMainEffect
getChannelNames	getSampleNames
getData	getData
getIndDesignData	getReplicateData
getMain	getMain
getMainNeg	getMain
getReplicateData	getReplicateData
getScale	getScale
getScreenNames	getSampleNames
grid.doublePerturbation	grid.doublePerturbation
grid.sgiHeatmap	grid.sgiHeatmap
normalizeMainEffectQuery	normalizeMainEffectQuery
normalizeMainEffectTemplate	normalizeMainEffectTemplate
normalizePlateEffect	normalizePlateEffect
plotDoublePerturbation	plotDoublePerturbation
plotHeatmap	plotHeatmap
postDrawDetails.doublePerturbation	grid.doublePerturbation
reportAnnotation	reportAnnotation
reportDoublePerturbation	reportAnnotation
reportGeneLists	reportAnnotation
reportHeatmap	reportAnnotation
reportMainEffects	reportAnnotation
reportNetworks	reportAnnotation
reportScreenData	reportAnnotation
reportStatistics	reportAnnotation
RNAinteract	RNAinteract-package
RNAinteract-class	RNAinteract-class
sgi	sgi
sgisubset	sgisubset
sgisubsetQueryDesign	sgisubsetQueryDesign
show,RNAinteract-method	RNAinteract-class
startReport	startReport
summarizeScreens	summarizeSamples
swaptree	swaptree
