varDistTaxPlot {PhyloProfile} | R Documentation

## Create variable distribution comparison plot

### Description

Create variable distribution plots between 2 groups of taxa for a selected gene.

### Usage

    varDistTaxPlot(data, plotParameters)

### Arguments

`data` | dataframe for plotting. Last column indicates what type of taxon group (in- or out-group). The first (or first 2) column contains values of the variables. See ?dataVarDistTaxGroup
`plotParameters` | plot parameters, including size of x-axis, y-axis, legend and title; position of legend ("right", "bottom" or "none"); mean/median point; names of in-group and out-group; and plot title. NOTE: Leave blank or NULL to use default values.

### Value

Distribution plots as a grob (gtable) object. Use grid.draw to plot.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### See Also

`dataVarDistTaxGroup`

### Examples

    data("mainLongRaw", package="PhyloProfile")
    data <- mainLongRaw
    inGroup <- c("ncbi9606", "ncbi10116")
    variable <- colnames(data)[c(4, 5)]
    plotDf <- dataVarDistTaxGroup(data, inGroup, "101621at6656", variable)
    plotParameters <- list(
        "xSize" = 12,
        "ySize" = 12,
        "titleSize" = 15,
        "legendSize" = 12,
        "legendPosition" = "right",
        "mValue" = "mean",
        "inGroupName" = "In-group",
        "outGroupName" = "Out-group",
        "title" = "101621at6656"
    )
    g <- varDistTaxPlot(plotDf, plotParameters)
    grid::grid.draw(g)

[Package PhyloProfile version 1.0.7 Index]