finalProcessedProfile {PhyloProfile} | R Documentation

## An example of a final processed & filtered phylogenetic profile.

### Description

An example of a final processed & filtered phylogenetic profile.

### Usage

    finalProcessedProfile

### Format

A data frame with 91 rows and 10 variables:

- geneID Seed or ortholog group ID, e.g. "100136at6656"

- supertaxon Supertaxon name together with its ordered index, e.g. "1001_Mammalia"

- supertaxonID Supertaxon ID (only different than ncbiID in case working with higher taxonomy rank than input's). e.g. "40674"

- var1 First additional variable

- presSpec The percentage of species presenting in each supertaxon

- category "cat

- orthoID Ortholog ID, e.g. "100136at6656|RAT@10116@1|G3V7R8|1"

- var2 Second additional variable

- paralog Number of co-orthologs in the current taxon

- taxonMon Name of supertaxon but without index, e.g. "Mammalia"

[Package PhyloProfile version 1.0.7 Index]