profileWithTaxonomy {PhyloProfile} | R Documentation

## An example of a raw long input file together with the taxonomy info.

### Description

An example of a raw long input file together with the taxonomy info.

### Usage

    profileWithTaxonomy

### Format

A data frame with 20 rows and 12 variables:

- geneID Seed or ortholog group ID, e.g. "OG_1017"

- ncbiID Taxon ID, e.g. "ncbi176299"

- orthoID Ortholog ID, e.g. "A.fabrum@176299@1582"

- var1 First additional variable

- var2 Second additional variable

- paralog Number of co-orthologs in the current taxon

- abbrName e.g. "ncbi176299"

- taxonID Taxon ID, e.g. "176299"

- fullName Full taxon name, e.g. "Agrobacterium fabrum str. C58"

- supertaxonID Supertaxon ID (only different than ncbiID in case working with higher taxonomy rank than input's)

- supertaxon Name of the corresponding supertaxon

- rank Rank of the supertaxon

[Package PhyloProfile version 1.0.7 Index]