getFastaFromFasInput {PhyloProfile} | R Documentation

## Get fasta sequences from main input file in multi-fasta format

### Description

Get fasta sequences from main input file in multi-fasta format

### Usage

    getFastaFromFasInput(seqIDs = NULL, file = NULL)

### Arguments

`seqIDs` | list of sequences IDs. Set seqIDs = "all" if you want to get all fasta sequences from the input file.
`file` | raw phylogenetic profile input file in multi-fasta format.

### Value

A dataframe with one column contains sequences in fasta format.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### Examples

    file <- system.file(
        "extdata", "test.main.fasta",
        package = "PhyloProfile", mustWork = TRUE
    )
    getFastaFromFasInput("all", file)

[Package PhyloProfile version 1.0.7 Index]