7c32e7c208bdfd8a2c4b1038d5667ece *DESCRIPTION
1adc7f1dd2255de597a3eda9e40aa1f7 *INDEX
bccd6770ae044408fdda3f1fbb6e9479 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
d0547e4d51e63a1ae6fa17e67079bd60 *Meta/hsearch.rds
99bb95f0f3a67cd08a2abf39caf07a5b *Meta/links.rds
141927253f8850d65348000e5c4b654c *Meta/nsInfo.rds
aab91017d30a2bc5c59dfbeee408c7a3 *Meta/package.rds
45e935f80d948e46624c25eb84761cd0 *Meta/vignette.rds
592791f90550f9649773a2d69234e38b *NAMESPACE
b7fb900790a740d862746997648dec09 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/PWMEnrich
9c09c393418c361477818aad78910532 *R/PWMEnrich.rdb
dde79871addc2ffc7d73f0641d843279 *R/PWMEnrich.rdx
fab7dcd868071f0d37ee37d0cc4c957c *doc/PWMEnrich.R
d9a566a297ac54a9857f2f551dd0773b *doc/PWMEnrich.Rnw
6fecae13cd8d07224ef359b8347d0bbd *doc/PWMEnrich.pdf
c6c53b28bd3ae2ad02412e78605b93d9 *doc/index.html
97ea684f7a8218dfe8a5255377f24c7a *extdata/bg.seq-test.RData
16737864e28ca293c3d43c9dc274e810 *extdata/example.fa
08048d68adc5c8493db6f4350732af86 *extdata/example.transfac
415a8826cfb40c10021953ac725c3f78 *extdata/jaspar-insecta.jaspar
378529a644ccceb87d72f3204dda1d59 *extdata/pfm_vertebrates.txt
d5940ef608cce77504b0927133c8dadb *extdata/stripe2.fa
2e6e376108f87945c08ffde1cd39a097 *extdata/tinman-early-top20.fa
bccfd13ec6ce43fcaddf0fe2779c6856 *help/AnIndex
316ab686a19563a5880b8606617d2b40 *help/PWMEnrich.rdb
d2ddc9a12018061b180e0da89963b479 *help/PWMEnrich.rdx
1ace1478c8cdd700def415ffe5a6070f *help/aliases.rds
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7336ea58e122433f811aa00e65c0d786 *html/00Index.html
5e692f2c271cbacfdede9716c0496545 *html/MotifEnrichmentReport.html
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9ec681f1f98e8a4b53b01be8ea959b22 *html/PFMtoPWM.html
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5338d888aaac0b37ce8699ecab75edb2 *html/PWMCutoffBackground.html
f6c0067a358c54b8fab48ac5785a7179 *html/PWMEmpiricalBackground.html
e7b41ffaf8ee1277e41b3a74a3de54cb *html/PWMGEVBackground.html
01b2bf4b4ddad3996ad6bb59bcd7bf99 *html/PWMLognBackground.html
3e2ff05399417673024ddb69d88497a4 *html/PWMUnscaled.html
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43d50cc3ca67d0b282a8b86ad7ab674d *html/getBackgroundFrequencies.html
0b96d367a756b09d5c1b037e5e01b500 *html/groupReport-commaMotifEnrichmentResults-method.html
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3e1d9293e4296413a5360cee08081a3e *html/makePWMCutoffBackground.html
64d4d76a6e6d39f4b5277d2e0cda76eb *html/makePWMEmpiricalBackground.html
16adcad8ee6b74b8780adb42e4cd1fb2 *html/makePWMGEVBackground.html
27d3ca095021e83afde64777a4eb8462 *html/makePWMLognBackground.html
3af4686cd003270f3bad19dd58120617 *html/makePWMPvalCutoffBackground.html
e01ef8641500d772f9dee5bc8ba27723 *html/makePWMPvalCutoffBackgroundFromSeq.html
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7e5cce5690be5710c1b54f4fb922ba80 *html/motifDiffEnrichment.html
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e16e8d3d3dd3aef8b12921d066ef2f5e *html/motifEnrichment.html
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462a3512feda79bccdef6deca4f8fb00 *html/motifScores.html
a2e3a08670300069bd9d64c45bd04e55 *html/motifSimilarity.html
9d6a4eb13e0e21d462aef5255ae25fba *html/operators-MotifEnrichmentReport.html
6b34b7a6e86d2162880833e0fbca68bd *html/operators-MotifEnrichmentResults.html
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4d24cabde9e16f2931524b01348a1bb7 *html/operators-PWMLognBackground.html
407fced95c337b022b470ca3c8f7bfab *html/plot.html
9c12b3c17dd360deb9b36899b061215c *html/plotMotifScores.html
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b230afa21defe77aa5d27ce35611d49a *html/plotTopMotifsGroup-commaMotifEnrichmentResults-method.html
c97cc5167eba8c2ee1c5a823df7cb9d2 *html/plotTopMotifsSequence-commaMotifEnrichmentResults-method.html
61d392136dc28a0466cd6d12a569592a *html/readMotifs.html
0845dd071486e9f2bd7d1c9f84c96878 *html/registerCoresPWMEnrich.html
2f3727de30c662a3894d92228b20c497 *html/reverseComplement.html
cc7f6c60ded4a06cbe90fb2eac06f379 *html/scanWithPWM.html
bbb86fda88c81d49423338e5e52bc3ec *html/seqLogoGrid.html
0a4ecf53cbc1e5c9533629b9d4b5067b *html/sequenceReport-commaMotifEnrichmentResults-method.html
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b26a9988617268233d24be061b0e14c4 *html/subsetting-PWMEmpiricalBackground.html
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a09a6c767317f94932aff201e380e354 *html/subsetting-PWMLognBackground.html
41c1251d7748e749c9218ba0baf3bd63 *html/toPWM.html
dd9156f56bd6e25e220358695baa78b7 *html/useBigMemoryPWMEnrich.html
f980cf6e1a56c37da2588b23b5e3525c *tests/test_clover.R
5ac6eb9e4d6cfbd62cf60c4c26bd8dba *tests/test_invalidInput.R
0b26bedee71d0a29f0c38fc32cda75ed *tests/test_motifEnrichment.R
2d850d37342371c6afeb0e055c33c19b *tests/test_similarity.R
