CoverageTrack {PING} | R Documentation

## Reads coverage track

### Description

This track displays the coverage of the genomic region by the reads used as input for the segmentation step.

### Usage

    CoverageTrack(ping, reads, chr, gen="gen", FragmentLength=200, name="XSET")

### Arguments

`ping` | An object of class `pingList`. The output of `PING`.
`reads` | An object of class `GRanges`. The reads used in the segmentation process.
`chr` | A character string for the chromosome name.
`gen` | An optional character string for the genome name.
`FragmentLength` | An `integer`. The fixed length of the reads. If PE is set to TRUE, this argument can be ignored.
`name` | A `character` string. The title of the track.

### Value

This function returns an object of class `AnnotationTrack`.

### Author(s)

Renan Sauteraud

### See Also

`postPING` `plotSummary` `AnnotationTrack` `plotTracks`

[Package PING version 2.30.0 Index]