84e60024b80dbe4fdd18cf20efd1a6a3 *CITATION
de8b949685ed9fbb962b86f43ffe6445 *DESCRIPTION
2e28c59f534352460308db525f1309a8 *INDEX
a4a91ad6bc1a1ab2c09c16f1f7f088a6 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
828f1fe1af4be12a27ee0d07ea0a20f6 *Meta/hsearch.rds
f244df4241217ccf5cd2d735d092f378 *Meta/links.rds
3c480e07f9bd3b1af2a2e392d084997b *Meta/nsInfo.rds
0e1948a2a9c4bb347fde902d1b69ac36 *Meta/package.rds
6f94e8b2d6671a0870afca023277fe6a *Meta/vignette.rds
ebdbeb4d09eeabe3da87e2942a3dc329 *NAMESPACE
e57f59556f85613172e597d16f9d0479 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/PGA
bbaa458d2f46037cfeffa4f4cefcf387 *R/PGA.rdb
d3b46a876eace9a012b7e7ca07b0274e *R/PGA.rdx
da744d2fd1ce9ea8082ead76055bd1ee *doc/PGA.R
8fe205eac3dc953585f2beca1bc4a2d2 *doc/PGA.Rnw
8ac7705eb37ca19a30dd284b0b9ab4d4 *doc/PGA.bib
670a4e2dde1d742e3267685f1867f1a4 *doc/PGA.pdf
c946a4e9edacdc559c6b907704244b98 *doc/index.html
d2d3001867978814dbb4f00d42de4619 *extdata/annotation/exon_anno.RData
9dada94eeb9674f03ed9b635c52cba72 *extdata/annotation/ids.RData
db7bedb40cc3d176b8adcb26cd2b7dc4 *extdata/annotation/procodingseq.RData
d1736ea15c31f160d149ed72a3e0baed *extdata/annotation/proseq.RData
b628aedf208c94ce986553216beb0e64 *extdata/annotation/splicemax.RData
90e65f32186a16153d5eec36bec09147 *extdata/annotation/txdb.sqlite
573459978f57f4b27cf015f8c1e0c987 *extdata/fusion/star-fusion_example_input.tsv
3aafce959a5cf5cdf207215ec236bbe2 *extdata/input/PGA.vcf
51fc19ac042cc844740c53b8d9cdf5ec *extdata/input/Trinity.fasta
671180bb64135edd17d9aa1e9e943063 *extdata/input/junctions.bed
9dff2ad9f7ff0e0eb8e05242ad5d8950 *extdata/input/mascot.dat
a9121d2732844083edb4558ab53cfb1d *extdata/input/msgfplus.mzid
1268f9781323037abfb7413176f8d76d *extdata/input/pga.mgf
8552639adf7bd23addfbb4dab285c0cd *extdata/input/transcripts.gtf
31035d33dde2f7183e5602e37e33bf80 *help/AnIndex
397adb0a10bcf4ae63444bc6ef23cb90 *help/PGA.rdb
8c0af5acdef5af5234ab2bfb073bcdfb *help/PGA.rdx
c5858b31d93543278a4a0137d9216d3c *help/aliases.rds
bd828cb8db079ec15b9e863d392f38e6 *help/paths.rds
2a1f49ca7836068ceb6706e9a02de619 *html/00Index.html
6b40989a67333c3e56845c80fd9da203 *html/PrepareAnnotationEnsembl2.html
ff6c2ec47befccb35905c5f276a21eca *html/PrepareAnnotationRefseq2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
06bdd505ef0dbfcbf8fb377e348cb457 *html/addGeneName4Ensembl.html
444476d9a888db681881c6016bc8623f *html/buildFusionProteinDB.html
aa69bc823c8c77648499ecfaa5c60960 *html/createProDB4DenovoRNASeq.html
5fcecbe97695b4b64da7dcd31789e3ad *html/dbCreator.html
7da6086c6cd3ad5e0249d3b948fe51fc *html/easyRun.html
aee6b45f556cdd047fd9c31fd83f2795 *html/parserGear.html
8d29f241d83929854345b08937498147 *html/reportGear.html
5f29c9e34a240f4af5874013edfb4fd8 *html/runTandem.html
912baa3efd6bd570df218f6072007c34 *parser4PGA.jar
720b2a86b21fa0eacbaf1abdbdf455ec *unitTests/test_check_parser.R
