hp_class {PCAN} | R Documentation

## HP class (Example data)

### Description

Each HP term can be of one or several classes. Classes are HP terms direct descendants of the 'Phenotypic abnormality' term.

### Format

A named list of 10962 character vectors.

### Details

These data are used to examplify the different functions of the package. More data are available in the MultiHumanPhenoDB package.

### Source

http://compbio.charite.de/hudson/job/hpo/1529/artifact/hp/hp.obo

### Examples

    data(hpDef, hp_class, package="PCAN")
    hp <- "HP:0100089"
    hpDef[which(hpDef$id==hp),]
    # This term has 2 classes:
    hpDef[which(hpDef$id %in% hp_class[[hp]]),]

[Package PCAN version 1.14.0 Index]