patternDistri {OVESEG} | R Documentation

## Probabilities of all upregulation patterns

### Description

This function estimates probabilities of all kinds of upregulation patterns among subtypes.

### Usage

    patternDistri(ppnull)

### Arguments

`ppnull` | a list returned by `postProbNull` or `OVESEGtest`.

### Details

The probability of each upregulation pattern is calculated by accumulating and normalizing genewise posterior probability of null hypotheses and of alternative hypotheses.

### Value

a data frame object containing all possible upregulation patterns and corresponding probabilities.

### Examples

    data(RocheBT)
    ppnull <- postProbNull(RocheBT$y, RocheBT$group, alpha='moderated')
    pd<- patternDistri(ppnull)

[Package OVESEG version 1.2.0 Index]