OUTRIDER                OUTRIDER - Finding expression outlier events
OutriderDataSet-class   OutriderDataSet class and constructors
aberrant                Number of aberrant events
computeGeneLength       Extracting the gene length from annotations
computeLatentSpace      Extracting the latent space
computePvalues          Calculate P-values
computeZscores          Z score computation
controlForConfounders   Autoencoder function to correct for
                        confounders.
counts                  Accessors for the 'counts' slot of an
                        OutriderDataSet object.
estimateBestQ           Estimation of Q
filterExpression        Filter expression
findEncodingDim         Find the optimal encoding dimension
fit                     Fit the negative binomial distribution
fpkm                    Calculate FPM and FPKM values
getBestQ                Getter/Setter functions
makeExampleOutriderDataSet
                        Create example data sets for OUTRIDER
normalizationFactors    Accessor functions for the normalization
                        factors in an OutriderDataSet object.
plotVolcano             Visualization functions for OUTRIDER
results                 Accessor function for the 'results' object in
                        an OutriderDataSet object.
sampleExclusionMask     Sample exclusion
sizeFactors             SizeFactors accessor and estimation function
