Maaslin2_wrapper {MMUPHin} | R Documentation

## Wrapper function for Maaslin2

### Description

Wrapper function for Maaslin2

### Usage

    Maaslin2_wrapper(feature_abd, data, exposure, covariates = NULL,
      covariates_random = NULL, output = tempdir(),
      normalization = "TSS", transform = "AST", analysis_method = "LM")

### Arguments

`feature_abd` | feature*sample matrix of feature abundance.
`data` | data frame of metadata.
`exposure` | name of exposure variable.
`covariates` | name of covariates.
`covariates_random` | name of random covariates.
`output` | directory for Maaslin2.
`normalization` | normalization parameter for Maaslin2.
`transform` | transformation parameter for Maaslin2.
`analysis_method` | analysis method parameter for Maaslin2.

### Value

a data frame recording per-feature coefficients, p-values, etc. from running Maaslin2.

[Package MMUPHin version 1.0.0 Index]