summary.thresholdSCRNACountMatrix {MAST} | R Documentation

## Summarize the effect of thresholding

### Description

Returns the proportion of (putative) expression, the variance of expressed cells, and -log10 shapiro-wilk tests for normality on the expressed cells

### Usage

    ## S3 method for class 'thresholdSCRNACountMatrix'
    summary(object, ...)

    ## S3 method for class 'summaryThresholdSCRNA'
    print(x, ...)

### Arguments

`object` | a `thresholdSCRNACountMatrix`
`...` | currently ignored
`x` | a `summaryThresholdSCRNA` object, ie output from `summary.thresholdSCRNACountMatrix`

### Value

a list of statistics on the original data, and thresholded data

### Methods (by generic)

- `print`: prints five-number distillation of the statistics and invisibly returns the table used to generate the summary

[Package MAST version 1.12.0 Index]