PSelf-class {MACPET} | R Documentation

## PSelf S4 Class

### Description

`PSelf` class in a S4 class which inherits from the `GInteractions` class and it contains Self-ligated PETs from ChIA-PET experiment. Furthermore it also contains the following in the `metadata` field:

`Self_info`

  A data.frame with the count statistics for the total PETs in each chromosome.

`SLmean`

  The mean size of the PETs in the data.

`MaxSize`

  Maximum size of self-ligated PETs.

`MinSize`

  Minimum size of self-ligated PETs.

### Details

`PSelf` class is created by the `MACPETUlt` function at Stage 2.

### Author(s)

Ioannis Vardaxis, ioannis.vardaxis@ntnu.no

### References

Vardaxis I, Drabløs F, Rye M and Lindqvist BH (2018). MACPET: Model-based Analysis for ChIA-PET. To be published.

### See Also

`AnalysisStatistics`, `plot`, `summary`, `MACPETUlt`, `ConvertToPSelf`

[Package MACPET version 1.6.0 Index]