sraToFastq {KnowSeq} | R Documentation

## sraToFastq downloads and converts the sra files to fastq files. The function admits both gz and sra formats.

### Description

This function downloads and converts the sra files to fastq files by using the URLs indicated through the urlsVector argument. The function admits both gz and sra formats. This function is used internally by `rawAlignment` but it can be used separatelly.

### Usage

    sraToFastq(urlsVector)

### Arguments

`urlsVector` | A vector that contains a list with the URLs requested.

### Value

Nothing.

### Examples

    # This function needs the download of the pre-compiled tools supplied by KnowSeq.

    ## Not run: sraToFastq(c("http://urlToSRA1", "http://urlToSRA2"))

[Package KnowSeq version 1.0.0 Index]