generate_mappings {KEGGlincs} | R Documentation

## The 'boilerplate' for this package's desired graph style

### Description

Generates an object that can be converted to a JSON file and subsequently applied to the graph for the markup specified by this package and the layout mirroring KEGG. Intended for use within `cyto_vis`

### Usage

    generate_mappings(style_name, map_edge_width, edge_width_attribute,
      min_score, max_score)

### Arguments

`style_name` | An argument to name style; when used inside of `cyto_vis` no name is needed
`map_edge_width` | A logical indicator; if FALSE no continuous mapping of edge width will be applied
`edge_width_attribute` | The attribute that will be used for edge width; if data is not added or the attribute is not part of the graphing information, the edge width will default to 1.
`min_score` | The minimum attribute value for the column used to map edge width
`max_score` | The maximum attribute value for the column used to map edge width

### Value

A list that can be converted to a JSON file to apply desired style/layout in Cytoscape

### Examples

    style.name = "myKEGGstyle"
    mappings <- generate_mappings(style.name, FALSE)

[Package KEGGlincs version 1.12.0 Index]