e07d1d8c6cf03b30c9bd578720eb1e05 *DESCRIPTION
a17fa95104c91768d41f007f69b84f9e *INDEX
b517250f1d896fb20a9f03bfe1724bf6 *Meta/Rd.rds
ec26cb73e2fa0cf82f571065e63e2b77 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
88648019605c323e7cdeb1cdfbdd37b4 *Meta/hsearch.rds
d75d75868d437223a9932451b6d13b94 *Meta/links.rds
770609f623a659dd28a52b56e2d6e0a0 *Meta/nsInfo.rds
8510cf622d4b086d7486084edc961f4f *Meta/package.rds
d80d06dc2519e487ca260463c9bd0838 *Meta/vignette.rds
33dcdf66a5988188e8f6519846492066 *NAMESPACE
c0bf081c8b492c9e071794fe1e9a3f9b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/InPAS
61eebcb61b98f377db4216074763eba9 *R/InPAS.rdb
b56889861623ec61ad7aa1c92ace33f3 *R/InPAS.rdx
875c71c35a5962e7306813868c1c42bf *data/datalist
cafef1e05d73c03e50d90e87935f9ba0 *data/utr3.danRer10.rda
ad1b6f62495ed8cceb7981b4c5573152 *data/utr3.hg19.rda
12aa976301363411d421ba9a97ffbd63 *data/utr3.mm10.rda
5b81273fb6b03afdd0406eacb5f0c13d *doc/InPAS.R
c2bf3a9f910d284b3f4606d7e38d890c *doc/InPAS.Rmd
4febc46b56864d84893b2eaf2115abc5 *doc/InPAS.html
0015487fddc81e8e1f85316ea6ab499a *doc/index.html
fd39ad651f9d1366d13a0d741098d0b3 *extdata/Baf3.extract.bedgraph
5ca9fbb2ed92f46da01127f48a5188c0 *extdata/CPs.MAQC.rda
fa1e4fe6f1c33d7ca297fa12506a0d2a *extdata/UM15.extract.bedgraph
ceeb863c3251b708f8fc30ec7266b816 *extdata/coverage.MAQC.rda
30f138b6f554fb5e304e86e2d568663f *extdata/eset.MAQC.rda
74350e6c2359aed876a3af9b030509ae *extdata/polyA.rds
7960399b72ebfd0cace25f5682a04821 *help/AnIndex
9e51dc772e559ab8059b8ea01fab0e58 *help/InPAS.rdb
513079d53fb2537df23643c1ef4a023d *help/InPAS.rdx
c07f02295e8d16a148b09b6cf716a6f1 *help/aliases.rds
4bb49cac12e82332c4a6beb7da36b501 *help/paths.rds
6637db1e47c5fedd94afa476eb66aba0 *html/00Index.html
97fd2b5885afadc181648acdb6b176a0 *html/CPsite_estimation.html
fc2b69dd2c6f1f8f81955819bce30c89 *html/CPsites.html
9cb75cf9b99f4d2dc07950045a9acfec *html/InPAS-package.html
f8cda78eb59e4d576ff88920707f7d88 *html/PAscore.html
6b57edd5d84a7bbb6ee0d17cdc0838f5 *html/PAscore2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
bb1259f3bab6aa8dcf6b042351ae61ec *html/UTR3TotalCoverage.html
ce870cbfbd0910954ee0f9272921c3c0 *html/UTR3eSet.html
9c03b335bd343e3f8119cd59345c62df *html/UTR3usage.html
0b414e565737d7366eaef0e5af99543a *html/covThreshold.html
62b6a1b35d663289e7daf3fdef975a87 *html/coverageFromBedGraph.html
1959667ac8d8a2d85ade305b158ef5f5 *html/coverageRate.html
4ef622021e6d3ccca12963b60fa41f1b *html/depthWeight.html
ab06c1cae2c11e59fb0a53169e78a324 *html/distalAdj.html
dbe59c6b5f41286fcd7395af32a69891 *html/filterRes.html
017a52b7548b7f60447f385f802e2efe *html/fisher.exact.test.html
4dff9afe0b9283ecbe1f187e92c417b5 *html/get.regions.coverage.html
b607a526e9fbccb4d791f9a90326cc52 *html/getCov.html
d990bd28be80cdf6a2ef9d300ed854fb *html/getUTR3eSet.html
8bfce0646b314ba3f23049cd2b80fd8a *html/getUTR3region.html
dfc741dafb20d04124e6580fbf82c90b *html/inPAS.html
c16e86af725d2bd9e975ddf76d0b094f *html/lastCDSusage.html
653e5f1fd7c0a51c566e59a0248f5d03 *html/limmaAnalyze.html
901c845195ab3e43c46403cf278d9376 *html/optimalSegmentation.html
e607a8336da66844bad8dfbf979a6f5d *html/polishCPs.html
5301d1f19884f4f0657f78ffdc48c5d4 *html/prepare4GSEA.html
07a34bbdc05f8bf4fb03dc8263a202ee *html/proximalAdj.html
3cf6a0dd1bb5a1c8478bf2d9db75dabc *html/proximalAdjByCleanUpdTSeq.html
ac7d8b058a025253af5ea52d106e3893 *html/proximalAdjByPWM.html
36ce75db0446ca92aa6e1c51df887049 *html/removeUTR3__UTR3.html
f3d6fa5f0af5258827ec458b19665c9f *html/searchDistalCPs.html
e37fe85dbd47dfea339d6f2b4d5c9461 *html/searchProximalCPs.html
a1fe16cf8388cb7c99da4d219716ec73 *html/seqLen.html
3ecbe984cbab07eaff020090d06cff38 *html/singleGroupAnalyze.html
d003e66d38816673f570a2da7918d913 *html/singleSampleAnalyze.html
83615ff7e3b2533bf23b076182c3eebf *html/sortGR.html
8dca14294f3caa0cf012eac340a72c18 *html/testUsage.html
f206fd9f8214b247e6d74a36a6f5c819 *html/totalCoverage.html
806ceaae9ab0fbf9ef7386bb111ac1e4 *html/trimSeqnames.html
71846eb6617fe42d37951d6d86134fc8 *html/usage4plot.html
0b13060026659652b77d8b69e18a6cbc *html/utr3.danRer10.html
680ef283a90a61ecd0e5fdaba74fc8d9 *html/utr3.hg19.html
000855113d70f5b406959eb856148606 *html/utr3.mm10.html
002338547186d038fbbddbd8ba913837 *html/utr3Annotation.html
148a8503b63d207f2f3f964fe1913092 *html/utr3UsageEstimation.html
c638c0c31de4ef83cefc934ed1c939f6 *html/valley.html
0d98d599c4eeaaefd17a5b0b630de266 *html/zScoreThrethold.html
9c0364f33917c3e3b5d5cfd94a33dd0d *unitTests/test_CPsites.R
34a65fd52a724977969eb6861dd86ed3 *unitTests/test_coverageFromBedGraph.R
3102a9d14d794b5356a01a5a326e407b *unitTests/test_getUTR3eSet.R
