Nora_5C {HiTC} | R Documentation

## HiTC - 5C data

### Description

5C data described by Nora et al. (2012)

### Usage

    data(Nora_5C)

### Format

Contains two `HTClist` objects (E14 and MEF). Each of them containing the ChrX intrachromosomal maps as a `HTCexp` object.

### Details

This 5C dataset published by Nora et al (GSE35721), contains two different samples, a male undifferentiated ES cells (E14, GSM873935) and a mouse embryonic fibroblasts (MEF, GSM873924). This dataset is mainly used to describe the available functionalities of the `HiTC` package. The data provided with the package are count data.

### Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35721

### References

Nora EP, Lajoie BR, Schulz EG, Giorgetti L et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 2012 Apr 11;485(7398):381-5. PMID: 22495304

### Examples

    data(Nora_5C)
    show(E14)
    show(MEF)

[Package HiTC version 1.30.0 Index]