hlaAASeqClass {HIBAG} | R Documentation

## Class of HLA Amino Acid Sequence Type

### Description

The definition of a class for HLA protein amino acid sequences.

### Value

There are following components:

`locus` | HLA locus
`pos.start` | the starting position in basepair
`pos.end` | the end position in basepair
`value` | a data frame
`assembly` | the human genome reference, such like "hg19"
`start.position` | the start position
`reference` | reference sequence

The component `value` includes:

`sample.id` | sample ID
`allele1` | amino acid or nucleotide sequence
`allele2` | amino acid or nucleotide sequence
`P1, ..., Pn` | if applicable, a matrix of posterior probability, row – sample, column – position of amino acid

### Author(s)

Xiuwen Zheng

### See Also

`hlaConvSequence`

[Package HIBAG version 1.22.0 Index]