76b1e0277cdeca293af92a8fedcf9a45 *CITATION
57e6bf0fec21e23290b2879eaeb1b26d *DESCRIPTION
e28d972269a8009e8470b5f2170af6bc *INDEX
9c36f726a912b0308677783d90f73ce3 *Meta/Rd.rds
9f9515264cf58e44a169cf856910049f *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
f52670201b5e13ae2b401c7081f40717 *Meta/hsearch.rds
10175048833a1c3b2fec3e4afd20998b *Meta/links.rds
aec384ad934b06c6c8cb3037871a8900 *Meta/nsInfo.rds
a0886f38c1533b28af24275b959783f1 *Meta/package.rds
723c2372c95d02a65c5185600863d7d1 *Meta/vignette.rds
79718fdf86de9ab7e626e590ba192864 *NAMESPACE
b83eae0cf23be06b9ff4e028d09f6383 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Genominator
bcd36ea27042608e9d531147035833f9 *R/Genominator.rdb
f4ff14c3548d593445e538d52ecc91f3 *R/Genominator.rdx
fe2019eaaec3238deec714a7353433d1 *benchmark/idxTiming.R
92ffb0897b6ff67bf0d1970dc8427350 *data/chr1_yeast.rda
61a467dd982b7017a5fd9df7b4698b8c *data/yeastAnno.rda
9f6389f71fbffe74ddc5560740433b55 *data/yeastAnno.sources.rda
eee9d82b7d329f9d1fc6c3687a9ae6ce *doc/Genominator.R
97ca8f5c7a6831cfa5637f89910861d6 *doc/Genominator.Rnw
00114e0710dc94e7deea39c0f764ac59 *doc/Genominator.pdf
584fac6f20fa92d02245ca34bf0fecd1 *doc/index.html
6d7a3961cb47d0368579b795c355015b *doc/plotting.R
ff6a3c5cbf66cd9c1efff3c23f777d0a *doc/plotting.Rnw
a8aef6953155cbfa802918af45f723a0 *doc/plotting.pdf
41c1496165b1f5cbd57d872998a08356 *doc/withShortRead.R
596c1fc9a785f563ef59eb35f5815a90 *doc/withShortRead.Rnw
26147bbf1350d6520e0ce8409488a568 *doc/withShortRead.pdf
a7e039d9604854b42b3034c0308be5a1 *help/AnIndex
0a869e7d3478894663bb57409cc4d9ab *help/Genominator.rdb
1d93c17e8f00468c2d954b9920311fd2 *help/Genominator.rdx
8f168e98e3ce9c74ac65a7c8021e15ab *help/aliases.rds
dcb10252022dd80f8a37b3fdbd51f0da *help/paths.rds
4409bddece476884d740c06abcec1952 *html/00Index.html
7aa3ec282b76ced710bd223680b2a054 *html/ExpData.html
5068527aa62df9e10cf5a49c5855e0c8 *html/Genominator.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2d5ac174fc305998971244b223e2bf75 *html/addPrimingWeights.html
a6bfc04661dc12bbb0008d4b680367a9 *html/aggregateExpData.html
6924c49aa62649b18dce836c7570ba68 *html/applyMapped.html
1a8903b425d59826f2c606b0b15a1c86 *html/collapseExpData.html
93fa6cf92d1b98cde5c049dd3a373b36 *html/computeCoverage.html
a1772613a3dc7e1adfeb7ddba3c7ed3b *html/computePrimingWeights.html
894a4fbb15cbe7a700dd47cac380d6ab *html/getRegion.html
8b3e79efeb67e0d1c4c876d97a912810 *html/importFromAlignedReads.html
cfbc1b6dec36545cdb57cd25e7573a49 *html/importToExpData.html
eea32ceb5be0ebcb703831f5ed6cca6d *html/joinExpData.html
acbd31d843e68a8e3c0663ae95cf2480 *html/makeGeneRepresentation.html
cb71d08d8d500628f367a1c4f5403320 *html/mergeWithAnnotation.html
11599d51233cd7e9d96ee4e227ce9a5f *html/plot.genominator.coverage.html
c79360af28bb19fc0b05da88b89742f2 *html/plot.genominator.goodness.of.fit.html
c7f6e47d54ec4d49a9b7595e1540b5bf *html/regionGoodnessOfFit-methods.html
d56ac580d76377947179e07a440af1b7 *html/splitByAnnotation.html
73ff3ff9030b86dcfc54ebff6d325faa *html/summarizeByAnnotation.html
381bf0bfca2d26ca92979524906ef4dc *html/summarizeExpData.html
5ce434981314ea964f32883831ae155e *html/validAnnotation.html
23aaf209cf6bcf2c6c8ef5cf3d1b535c *html/yeastAnno.html
862763ecbcbc50dd334a17ec6bb2fd8a *sample.db
7e049f5b6c468d78ad7fa82b55affaa5 *scripts/consistency.txt
a015d1b9430e4a51085982e200c24fca *scripts/import-marioni.sh
b2dfdbaa5c85151db09947ab2550a468 *scripts/pipeline-marioni.R
ba96868b64604b6ba7b178a06503086e *scripts/pipeline-marioni.sh
a0bd50f01f6e2bfe251cea9c72983eaf *scripts/pipeline-yeast1.sh
53a9b60c55b249540ee08fb72eb2721c *scripts/pipeline.sh
0c0efe8a6c41be6a96d496a4b03ecf34 *scripts/reshape-marioni.pl
d204b6b7dfaf9baf5a6c65234e75e05d *scripts/reshape-yeast1.pl
c450860e7db68ed870a96137487b4bdd *scripts/sqlimport.sh
d9fefd32f56e205c966693c1e115c275 *scripts/temp.R
