plotSummaryStats {GenomicInteractions} | R Documentation

## Plot summary statistics for a GInteractions object

### Description

Makes summary plots of the counts, interaction distances, interaction annotations, and percentage of cis and trans interactions for a GInteractions object using 'plotCounts', 'plotDists', 'plotCisTrans', and 'plotInteractionAnnotations'.

### Usage

    plotSummaryStats(GIObject, other = 5, cut = 10)

### Arguments

`GIObject` | A GInteractions object
`other` | Default 5. Passed to plotInteractionAnnotations. Interaction types making up fewer than "other" percent of the total interactions will be consolidated into a single "other" category.
`cut` | Default 10. Passed to plotCounts.All interactions with counts > cut are consolidated into a single category.

### Value

invisible(1)

### Examples

    data(hic_example_data)
    plotSummaryStats(hic_example_data)

[Package GenomicInteractions version 1.20.3 Index]