.processChiapetName {GenomicInteractions} | R Documentation

## Function to process names relating to interactions stored in bed12 formats.

### Description

In bed(n) formats interaction data cannot be stored directly due to the inability of the format to handle trans-interactions. It is only capable of storing cis-interactions through the use of blockStarts and blockEnds. As such the information is typically stored as a string of the format chr1:start1..end1-chr2:start2..end2,N (e.g. \"chr1:3268539..3269061-chr10:103124111..103124631,4\".). This function takes a vector of these strings and converts them to a data.frame.

### Usage

    .processChiapetName(x)

### Arguments

`x` | a vector of names stored in the bed file

### Value

a data.frame containing all of the processed information

[Package GenomicInteractions version 1.20.3 Index]