bb24ea6bcc6b3b3dc674edae449d8e9a *DESCRIPTION
36e9cdb7b00a09aff787028035da87e8 *INDEX
aab1a1a690350b2cafe0aa22ee226218 *LICENSE
ceb0cf99d63dfc76baeb9f51c124a61e *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
afcae040821ee16ad5e37744a8154b10 *Meta/hsearch.rds
bff91adb35ae1eb0b967937e50132879 *Meta/links.rds
884491713c69f816690613a331b2882d *Meta/nsInfo.rds
7502926a215a5e10eeb6f85dc4105b50 *Meta/package.rds
31141c91f42d23705226c674e4e1ebb9 *Meta/vignette.rds
168ebfab71a76fab29dffd78ae64b4b7 *NAMESPACE
e5b46e94fec5fe30da73f727cf97644e *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/GeneStructureTools
bb2a024af13b08e950baa25e3fed8e03 *R/GeneStructureTools.rdb
2dbb7f62dcd59e8e739cd0a92eb9440a *R/GeneStructureTools.rdx
3f8345ef685bc5402955a0f0bacd6f97 *doc/Vignette.R
a986096c2549236e38c331c1eb88d14f *doc/Vignette.Rmd
ea69ffb65a11a0c2c7411d8eeb8becbc *doc/Vignette.html
542839b3e9e3893d67c2321bebd1b96d *doc/index.html
a9ba88162c20eddfc11c351d92fdcd09 *extdata/dexseq_process.R
96640b2e1735a4a23445a79154a89427 *extdata/dexseq_results_significant.txt
21a6c46d6193261e7bbcf4c7e1849f61 *extdata/example_gtf.gtf
c500de5992f92ebc83581899338c6d87 *extdata/gencode.vM14.dexseq.gtf
b28e8fedfee20f988113945166d52e0d *extdata/leafcutter/per_intron_results.tab
962287f8f3daaaae762c5f2eb8ab6267 *extdata/leafviz2table.R
d340f2509b1c4e1ccc74ed9e3b7799a0 *extdata/whippet/01_v_21.diff.gz
a751ff8f2e7f44be9fafbcedf6380afc *extdata/whippet/A01.jnc.gz
14fc894210fd1272e528613d72c5827b *extdata/whippet/A01.psi.gz
4bb796ee52ba3c7bff0733fd152de391 *extdata/whippet/A21.jnc.gz
bab86c79e977dd697ad0fdf037e2575d *extdata/whippet/A21.psi.gz
a64605c248ed60f04f1d5dfc334f181d *extdata/whippet/B01.jnc.gz
44c88c32417f2146e5e1a394243531be *extdata/whippet/B01.psi.gz
1210ab94aae2149703812243434a9883 *extdata/whippet/B21.jnc.gz
63b0451eca429697512091dbe65874cc *extdata/whippet/B21.psi.gz
f0e50ed69a8762a0c858c1b759ec7294 *help/AnIndex
7758044309e83fccf6f3076dfdec053f *help/GeneStructureTools.rdb
3de0d1738a99636847617ca884540011 *help/GeneStructureTools.rdx
118e74c768e33977beb02ce46bc16afb *help/aliases.rds
360f2388186a27cd6cff4fe4698de0a5 *help/paths.rds
4903d6253ea800cdc70aaacf545015fe *html/00Index.html
e7328fa6f9e3e5e0274d4d71ade2d7a9 *html/DEXSeqIdsToGeneIds.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c144a96dc70f24035c197718fb819d3b *html/UTR2UTR53.html
8090e7d6f33fd0bb3c16940338a6ef4e *html/addBroadTypes.html
e417e27e63ec70946b99def6b1e15eeb *html/addIntronInTranscript.html
a8f147619f22fd4b3d595c7a39295922 *html/addSets.html
f108951cc4a048f0ec39ad4b51d8352b *html/alternativeIntronUsage.html
ea914aa82998fd0d37fdf75bc5be0b2b *html/annotateGeneModel.html
2707719e5c5ee9335936de79c6ebac63 *html/attrChangeAltSpliced.html
7c0b921ba5e71ff205a045026e2cfd4b *html/coordinates-methods.html
a7edc280a550156a8e161c3fcf29f493 *html/cumsumANDpad.html
ea2438e34e73354f99961df404803563 *html/diffSplicingResults-methods.html
9a2fe15cc7a954f7c3f9f5c8bfd231e3 *html/exonsToTranscripts.html
0c417647b99a8bc330c896a98f37eba7 *html/filterGtfOverlap.html
f2211be692b14f0bf48564c6f35bf2bc *html/filterWhippetEvents.html
44af8f002007f7e2c4865c28e0e1e78e *html/findDEXexonType.html
d475edd42ffe615694f415226621faf2 *html/findExonContainingTranscripts.html
f214a83f762a0162f284b80464e202db *html/findIntronContainingTranscripts.html
16c5f512f60ad54baa6ff1cc9a3b89d3 *html/findJunctionPairs.html
48f1ca3c0bc990a6d6c5b258584e1832 *html/formatWhippetEvents.html
835c14d4472bd53e5ea98fe3a1ad7150 *html/getOrfs.html
acf4b79895045bbf2b76141132022b32 *html/getUOrfs.html
c3cfef0a0f80810f2f2f756c41ce9daf *html/junctions-methods.html
25be9eb6652779625152aff453f162f0 *html/leafcutterTranscriptChangeSummary.html
2ca12ed942e9b7636bc541515aa25f1e *html/makeGeneModel.html
4cd92c08afc9686efafbb91fdb107aa7 *html/maxLocation.html
1d9a535ac3cc5d09b2ada50b106a97cd *html/orfDiff.html
8ba2d34dfc89247c120a44f5b7e4fbfd *html/orfSimilarity.html
25152f17ddd8163123a1588aa1c31417 *html/overlapTypes.html
094fc6e96c0769cc220f0c97a66ccf8a *html/readCounts-methods.html
a940a63c7e7e0e2d9094d6a9335201ad *html/readWhippetDIFFfiles.html
031e01ac989b5851cf73dceeebfdcd40 *html/readWhippetDataSet.html
a8ad0bcf45fbbad86fba033b635e7587 *html/readWhippetJNCfiles.html
ad61d531788b2c6ce932200b21c1be97 *html/readWhippetPSIfiles.html
810b001e225ace7b0bdb917b48179b3f *html/removeDuplicateTranscripts.html
1bc7308fd79dd9557a5c483ca723448b *html/removeSameExon.html
1704bde2cfe05f7f8c5ead3ec8efdc18 *html/removeVersion.html
2a23e5e063f859867bd459af5a9ae287 *html/reorderExonNumbers.html
1a8a7a1bb57d69bfa3a27ea8c5b1d6dd *html/replaceJunction.html
6f1e4eea2bc03b72857eb07128a56cc9 *html/skipExonInTranscript.html
a51c7a71f9ad4859607e7552c2f7776f *html/summariseExonTypes.html
9a1453fd721ad74fe12e66640df99779 *html/transcriptChangeSummary.html
ccd19627e27fc9348038b1bdfd3dcf09 *html/whippetDataSet-class.html
e89020b8c38357426f216749ff8fab91 *html/whippetTranscriptChangeSummary.html
