buildNetwork {GeneNetworkBuilder} | R Documentation

## construct the regulatory network

### Description

Get all the connections of interesting genes from regulatory map.

### Usage

    buildNetwork(TFbindingTable, interactionmap, level = 3)

### Arguments

`TFbindingTable` | a matrix or data.frame with interesting genes. Column names must be 'from', 'to'
`interactionmap` | Transcription regulatory map. Column names of interactionmap must be 'from','to'
`level` | Depth of node path

### Value

a dataframe or matrix of all the connections of interesting genes

### Examples

    data("ce.interactionmap")
    data("example.data")
    xx<-buildNetwork(example.data$ce.bind, ce.interactionmap, level=2)

[Package GeneNetworkBuilder version 1.28.1 Index]