data.SNP {GeneGeneInteR} | R Documentation

## Multiple genes dataset

### Description

A case-control dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients (266 individuals affected by Rheumatoid Arthritis and 163 Health controls)

### Usage

    data(data.SNP)

### Format

A list with 3 objects:

snpX

  SnpMatrix object with 312 SNPs and 429 individuals.

genes.info

  a data frame where each SNP is described by its rs ID, its position and the gene it belongs to.

Y

  Factor vector of length 429 with 2 levels ("Health Control or "Rheumatoid"). `Y` correspond to the case-control status response variable.

### Value

A dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients.

### Source

All three objects were taken from NCBI web site and are part of the GSE39428 series Chang X., et al. Investigating a pathogenic role for TXNDC5 in tumors. Int. J. Oncol., 43(6): 1871-84, 2013.

[Package GeneGeneInteR version 1.12.0 Index]