GeneBreak {GeneBreak} | R Documentation

## GeneBreak: A package for gene breakpoint detection on copy number abberation data

### Description

The GeneBreak package performs cohort based recurrent gene breakpoint detection on copynumber data. It is possible to use the output of the function `CGHcall` from the package `CGHcall` or the function `callBins` from the package `QDNAseq` as the input for this analysis.

### GeneBreak functions

Analysis starts with the function `getBreakpoints` and continues with:
`bpFilter` to exclude certain breakpoints from the analysis
`addGeneAnnotation` to add gene location information
`bpGenes` to determine which features (probes/bins) are related to which genes
`bpStats` to determine which gene breaks are recurrent in the cohort

[Package GeneBreak version 1.16.0 Index]