GeneAnswers-package {GeneAnswers} | R Documentation

## Integrated Interpretation of Genes

### Description

GeneAnswers provide an integrated tool for biological or medical interpretation of the given one or more groups of genes by means of statistical test.

### Details

Package: | GeneAnswers
Type: | Package
Version: | 1.6.0
Date: | 2010-10-14
License: | LGPL version 2 or newer

### Author(s)

Gang Feng, Lei Huang, Pan Du, Tian Xia, Xishu Wang, Jing, Wen, Warren Kibbe and Simon Lin

Maintainer: Gang Feng <g-feng@northwestern.edu> and Lei Huang <lhuang7@uchicago.edu>

### References

1. Feng G, Shaw P, Rosen ST, Lin SM and Kibbe WA, 'Using the Bioconductor GeneAnswers Package to Interpret Gene Lists.' Methods Mol Biol. 2012 802:101-12.

2. Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

3. Du, P., Feng, G., Flatow, J., Song, J., Holko, M., Kibbe, W.A. and Lin, S.M., (2009) 'From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations', Bioinformatics 25(12):i63-8

4. Osborne, J.D., Flatow, J., Holko, M., Lin, S.M., Kibbe, W.A., Zhu, L.J., Danila, M.I., Feng, G. and Chisholm, R.L., Annotating the human genome with Disease Ontology. BMC Genomics. 2009 Jul 7;10 Suppl 1:S6.

### Examples

    data('humanExpr')
    data('humanGeneInput')
    x <- geneAnswersBuilder(humanGeneInput, 'org.Hs.eg.db', categoryType='GO.BP', testType='hyperG', pvalueT=0.01, FDR.correct=TRUE, geneExpressionProfile=humanExpr)
    class(x)

[Package GeneAnswers version 2.28.0 Index]