geneAnswersChartPlots {GeneAnswers} | R Documentation

## Make pie chart and bar plot

### Description

Make pie chart and bar plot for given GeneAnswers instance

### Usage

    geneAnswersChartPlots(x, chartType=c('pieChart', 'barPlot', 'all'), sortBy = c('geneNum', 'pvalue', 'foldChange', 'oddsRatio', 'correctedPvalue'), newWindow=TRUE, ...)

### Arguments

`x` | a GeneAnswers instance
`chartType` | plot type, "pieChart", "barPlot" or both could be specified.
`sortBy` | the column will be used to be represented.
`newWindow` | logic, determine whether draw on a new canvas.
`...` | additional arguments passed to piechart or barplot.

### Details

chartType could be pie chart, bar plot or both (parameter is "all"). specifiedCols is the column of enrichmentInfo that will be used to plot. It could be one of 'genes in Category', 'p value' or 'fdr p value'. If chartType is set to 'all', the barplot will be drawn on a new canvas whatever newWindow is set to TRUE or FALSE.

### Value

A pie chart and/or barplot are generated depends on specification.

### Author(s)

Gang Feng, Pan Du and Simon Lin

### References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

### See Also

`chartPlots`

### Examples

    example(GeneAnswers)
    ## Not run: geneAnswersChartPlots(x)

[Package GeneAnswers version 2.28.0 Index]