0f13879758690de13e08cdbbb64322d7 *CITATION
a4c6a592e435a5cdb514aea6dfc16ddb *DESCRIPTION
757d3fc601278b9f0538f35b5eb1c5cc *INDEX
06255bc88e5a774a5e77416b5d1fbcd8 *Meta/Rd.rds
bcb04a421cf72cd908c303df677ab3b6 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
f088fb0b64f32c4362483d6889363a05 *Meta/hsearch.rds
315235de0b86ca18cc223ee98edf334b *Meta/links.rds
4232029f75fdb055e96364203e36e70a *Meta/nsInfo.rds
d58acebea0d4bf1efe4f769fee7b6ad2 *Meta/package.rds
3b164c57dac6cd2b844cdfe9f10d99f5 *Meta/vignette.rds
72ee1921276696de34d6c12e559f07d4 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/FourCSeq
dce70f650c72a77ffe1f47a1f8a89af0 *R/FourCSeq.rdb
63883152b5380f7f5cb413a40c57c04c *R/FourCSeq.rdx
e712884310e3ae0225ae27d9b4125f3d *data/datalist
0789fe12ab99c865a0bbfad6109dd70a *data/fc.rda
16ca8c7048b6cc6872ef0b622068a9bc *data/fcf.rda
2417ac37a22bc1cc547d5b39566dd8ba *doc/FourCSeq.R
d88c442490157761fcb294bb0f108775 *doc/FourCSeq.Rnw
974e32f6f5708e79a9c9f5e1e718194b *doc/FourCSeq.pdf
988ed573102103c3c8a6351953ffddaa *doc/index.html
a47189afb85d952ce3f8c9029c5426ae *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
e66069ad85339fc6d53c82fd15331b9e *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
71abbf35f0027ba4136a183be67105b3 *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
b9ae7b5dd37a082cde997aeeecd30b8a *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
9995280b16d4dd17a2f6d469969d70bb *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
0cc7e25225dcdea740c8eb34c00cdaee *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
fbe26ce19c28dabbf2e4091a1badd2d4 *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
0d76977b2e36046cc176112776c5fa4e *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
d7271804926af64db2e5967c5dcd973b *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
89cda3597b0911a9021eb51a8d5a5620 *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
26631755da6e4834f94337426858e559 *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
36692e73c13be4c94e3c355b9a1a697b *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
255a24367518eb0f66ac409b42de54f3 *extdata/dm3_chr2L_1-6900.fa
22c667eddcaa6a93ba036d92d619b3d9 *extdata/primer.fa
52cdc74e647c9f0cd992a5b5c8e56263 *extdata/python/demultiplex.py
d3bca03dda0cf76445b40efb8a81d07f *help/AnIndex
75f28eb3540fb90f04765e3b94aa53a3 *help/FourCSeq.rdb
ec71f655989588fa71f1cd60edf82168 *help/FourCSeq.rdx
d745f552007c71967dda6b5c9571213b *help/aliases.rds
36ab888fbee5abf40e0e4f86de5f61ba *help/paths.rds
68c1fa0322c4c503bd46b2f821baea89 *html/00Index.html
36bb0b460f474045e3d83d48a6b91b78 *html/FourC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
716855e9bc9d393f9340cb78055f8c36 *html/addFragments.html
63a80dd15182a01ad7e553f9782c648a *html/addPeaks.html
3f73a45812918c44a74584e5a695c78d *html/addViewpointFrags.html
12027410b3903bfc71d10cab35f4fe03 *html/combineFragEnds.html
017c7ba834213ddfeaca25308dc60c42 *html/countFragmentOverlaps.html
4f5c4a9a5d1869c6877a75136e30e9c2 *html/countFragmentOverlapsSecondCutter.html
3e90e1be9b8ffd48ce682be4380b5c21 *html/distFitMonotone.html
4d6ebbc8b1c61450c549b163791fcda0 *html/distFitMonotoneSymmetric.html
71f1bb82ce9c2d5f1c67424b86a27d1c *html/fc.html
85929468a46d785cc4cfc035fcd2d6d0 *html/fcf.html
c392e16fadd7060d99be5380d181adef *html/findViewpointFragments.html
361c16b9672488558ecd62ca07057020 *html/getAllResults.html
ae8758ae146a5294f93f3bee90269214 *html/getDifferences.html
55522601cb202b5790894b7b7cf0f543 *html/getDistAroundVp.html
3107b6bc9814e53adb2a4115a04e0bdb *html/getNormalizationFactors.html
075ebf6b0d23ac5a4ed90d7f853ff31f *html/getReferenceSeq.html
e0113b0d1c52447c6df1384d8ea9aa8d *html/getZScores.html
3a0004afa010a2cc187929b56a7fc99b *html/normalizeRPM.html
04d48b32c67dcee40ad843fd27f93812 *html/plotDifferences.html
e727cca3bbe05b709958ada21004062c *html/plotFits.html
3d6d62f2a5b46c31b8e983df9c2ce579 *html/plotNormalizationFactors.html
934c5eff53c2b4646b609958c6a9dc99 *html/plotScatter.html
98a5dad7868f2c97e2720d508ef4b66b *html/plotZScores.html
f7420bce0917b79db7c0659bfd13c75f *html/smoothCounts.html
85241e5d67a6158d6cfae04141bc017a *html/smoothHitPerCent.html
880cf664c3d604f54e69c656c9e601d2 *html/writeTrackFiles.html
