smoothCounts {FourCSeq} | R Documentation

## Smooth the counts of neighboring fragments

### Description

Counts are smoothed using the number of fragments provided by binWidth. binWidth has to be an odd number so that an equal number of fragments to each side of the current fragment are used for smoothing.

### Usage

    smoothCounts(object, assay = "counts", binWidth = 5)

### Arguments

`object` | A `FourC` object.
`assay` | Assay name that will be smoothed.
`binWidth` | Integer vector of odd numbers.

### Value

Returns an updated `FourC` object with smoothed counts for each binWidth as new assays.

### Author(s)

Felix A. Klein, felix.klein@embl.de

### See Also

`FourC`

### Examples

    data(fc, package="FourCSeq")

    fc <- smoothCounts(fc)
    fc

[Package FourCSeq version 1.20.0 Index]