examdata_bg {FoldGO} | R Documentation

## Background sets of genes used in examples

### Description

We used genes from two datasets in examples:

1. RNA-seq experiment on auxin treatment of Arabidopsis thaliana roots (degenes)

2. RNA-seq experiment on mRNA differential expression in LNCaP cells expressing the wild-type androgen receptor (AR-WT) or the ligand-independent AR-V7 splice variant (degenes_hum)

### Usage

    bggenes

    bggenes_hum

### Format

A vector containing the GeneIDs with 18039 and 38238 for A. thaliana and H. sapiens correspondingly

### Source

1. A. thaliana and auxin: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97258

2. H. sapiens LNCap AR-V7: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71334

### Examples

    # load background genes from A. thaliana RNA-seq experiment
    data("bggenes")

[Package FoldGO version 1.4.0 Index]