GetMFIs {FlowSOM} | R Documentation

## Get MFI values for all clusters

### Description

Get MFI values for all clusters

### Usage

    GetMFIs(fsom, colsUsed = FALSE, prettyColnames = FALSE)

### Arguments

`fsom` | FlowSOM object as generated by the FlowSOM function or the BuildSOM function
`colsUsed` | logical. Should report only the columns used to build the SOM. Default = FALSE.
`prettyColnames` | logical. Should report pretty column names instead of standard column names. Default = FALSE.

### Value

Matrix with median values for each marker

### Examples

    fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
    flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE,
                          scale=TRUE,colsToUse=c(9,12,14:18),nClus=10)
    mfis <- GetMFIs(flowSOM.res)
    mfis <- GetMFIs(flowSOM.res$FlowSOM)

[Package FlowSOM version 1.18.0 Index]