seqToGeneGroup {FindMyFriends} | R Documentation

## Get gene-to-genegroup relationship

### Description

This method returns the group membership for each gene in the pangenome as a vector of indices. Element 1 corresponds to gene 1 and the value is the index of the corresponding gene group. If gene groups have yet to be defined it returns a vector of length 0.

### Usage

    seqToGeneGroup(object)

    ## S4 method for signature 'pgInMem'
    seqToGeneGroup(object)

### Arguments

`object` | A pgVirtual subclass

### Value

An integer vector with an element for each gene in the pangenome.

### Methods (by class)

- `pgInMem`: Gene to genegroup indexing for pgInMem subclasses

### Note

Required for extending the class system of FindMyFriends

### See Also

`seqToOrg` for gene-to-organism relationship

### Examples

    testPG <- .loadPgExample(withGroups=TRUE)

    # Have a look at what the first six genes belongs to
    head(seqToGeneGroup(testPG))

[Package FindMyFriends version 1.16.0 Index]