groupNames {FindMyFriends} | R Documentation

## Get and set the names of gene groups in the pangenome

### Description

These methods lets you manipulate the naming of gene groups in the pangenome. By default organisms are numbered consecutively but this can be changed at will. New gene groups will be numbered though despite what naming scheme has been introduced before.

### Usage

    groupNames(object)

    groupNames(object) <- value

    ## S4 method for signature 'pgInMem'
    groupNames(object)

    ## S4 replacement method for signature 'pgInMem'
    groupNames(object) <- value

### Arguments

`object` | A pgVirtual subclass
`value` | A vector with new names - will be coerced to characters

### Value

In case of the getter a character vector with names

### Methods (by class)

- `pgInMem`: Get gene group names for pgInMem subclasses

- `pgInMem`: Set gene group names for pgInMem subclasses

### Note

Required for subclasses of pgVirtual in order to extend the class system of FindMyFriends

### Examples

    testPG <- .loadPgExample(withGroups=TRUE)
    head(groupNames(testPG))

    groupNames(testPG)[20] <- 'Gene group 20'

[Package FindMyFriends version 1.16.0 Index]