| calc_detP {ENmix} | R Documentation |
Calculate detection P values based negtive internal control probes or out of the band (oob) probes
calc_detP(rgSet,detPtype = "negative")
rgSet |
An object of class |
detPtype |
Calculate detection P values based on negtive internal control ("negative") probes or out of the band ("oob") probes |
An numerical matrix of detection P values, with row for CpGs and column for samples
Zongli Xu
Wanding Zhou et al. eSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions Nucleic Acids Research, 2018
## Not run:
path <- file.path(find.package("minfiData"),"extdata")
rgSet <- readidat(path = path,recursive = TRUE)
detp=calc_detP(rgSet,detPtype = "negative")
detp2=calc_detP(rgSet,detPtype = "oob")
## End(Not run)