mhtplot {ENmix} | R Documentation

## P value manhattan plot

### Description

Draw P value manhattan plot

### Usage

            mhtplot(dat,color="bg",sigthre=NULL,markprobe=NULL,
                     markcolor="red", outf="mht.jpg")

### Arguments

`dat` | A data frame from bed format file with colname name "V1","V2", "V3","V4","V5", V1 indicate chromosome (1,2,3,...,X,Y), V2 is chromosome position, V4 is for P value and V5 for name of CpGs
`color` | Color scheme of manhattan plot, "bg" indicate "black and gray"
`sigthre` | P value of significant threshold line
`markprobe` | A list of CpGs to be marked out
`markcolor` | Color code for marked probe
`outf` | figure file name, default "mht.jpg"

### Details

Draw manhattan plot based on bed file format input file. Optional mark a subset of probes

### Author(s)

Zongli Xu

[Package ENmix version 1.22.6 Index]