ENCODEBindingConsensus-class
                        ENCODEBindingConsensus: consensus peaks derived
                        from ENCODE files.
ENCODEExpressionSummary-class
                        ENCODEExpressionSummary summarize means of
                        expression across ENCODE files.
ENCODESummary-class     ENCODESummary objects: summaries of multiple
                        ENCODE files.
ENCODExplorer           ENCODExplorer
buildConsensusPeaks     Calculates the consensus peaks defined by the
                        results of a previously completed ENCODE query.
buildExpressionSummary
                        Calculates average expression levels of the
                        results of a previously completed ENCODE query.
clean_column            Clean a single column of the data.frame
clean_table             Clean a data.frame that was produced by ENCODE
                        REST API
createDesign            Create a design for the files associated with
                        the result of a queryEncode, fuzzySearch
                        research or a 'data.table' from createDesign.
downloadEncode          downloadEncode is used to download a serie of
                        files or datasets using their accession.
download_dt_file        Downloads all files inside a data.table.
download_single_file    download_single_file Downloads a single file
                        and checks if md5 checksums match.
fuzzySearch             Fuzzysearch is a searching function for a
                        string or a list of string within the encode_df
                        'data.table'. For faster processing, pass
                        encode_df object as database parameter.
get_encode_df           Returns a "light" version of ENCODE file
                        metadata.
get_encode_df_demo      Get a demo encode_df
get_encode_df_full      Concatenates all available file metadata into a
                        single data table.
queryConsensusPeaks     Queries ENCODE for consensus peaks.
queryEncode             Produce a subset of data following predefined
                        criteria
queryEncodeGeneric      Produce a subset of data following predefined
                        criteria.
queryExpressionGeneric
                        Queries and returns average expression levels
                        for a given biosample_name.
queryGeneExpression     Queries and returns average gene expression
                        level for a given biosample_name.
queryTranscriptExpression
                        Queries and returns average transcript
                        expression level for a given biosample_name.
searchEncode            Simulate a query on ENCODE website and return
                        the result as a 'data.frame'
searchToquery           Convert searchEncode output in queryEncode
                        output.
shinyEncode             Launch a shiny interface for ENCODExplorer
