391f8a3899bc796bbed73c5b3212a2d8 *CITATION
121494cdaeed5170c363f6d4eedfdc81 *DESCRIPTION
ae644fcd49997d3efa297b417ab4100f *INDEX
343c79813976f8d78aee694475230ef0 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
4030410726c7562148cdb09ba69908fc *Meta/hsearch.rds
c825a881a606718b2b92f62aad528479 *Meta/links.rds
0572ad5cda205ef5a0c0b3ab3bfdcaba *Meta/nsInfo.rds
c4ed6c390cc67fd482fff9c14a34ba29 *Meta/package.rds
0d199170c1b029c249ff34da4b91dd87 *Meta/vignette.rds
11bec9a52fb45fc35a863eff91b538c7 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/DiffLogo
9a7598d05a5b0a5600d273f996eb6e1a *R/DiffLogo.rdb
509ed83265ab0f327fa93a2e99bdb52c *R/DiffLogo.rdx
e27c8b408c4ec4b44194743158c837c0 *doc/DiffLogoBasics.R
68c883ea98ff6663d211382a28a0038c *doc/DiffLogoBasics.Rnw
f43e4a13daf7baface074a80e9b92ed9 *doc/DiffLogoBasics.pdf
187d017a70ac056aad2a2f75d7648a88 *doc/index.html
9e64524098dcc3547b0a5033d37a3984 *extdata/alignments/F-box_bacteria.seq.fa
b638c19a42f513e456205f9f25794d2f *extdata/alignments/F-box_fungi.seq.fa
9c3c87fdf80fefc6cf3d20485aa94743 *extdata/alignments/F-box_metazoa.seq.fa
81c829501e6d19ac9ebe29dc3eecf303 *extdata/alignments/F-box_viridiplantae.seq.fa
45eea31652c9bf73aff2c145ab10ce97 *extdata/alignments/Mad.txt
707dbdd70ccc0cc51590f505e03f6a70 *extdata/alignments/Max.txt
b411ab2abc76e3437ccd6e818df31d54 *extdata/alignments/Myc.txt
d6422185297c2583f4419f467aec0574 *extdata/alignments/calamodulin_1.txt
4d0f44df6595197edd2b21d3549b4e57 *extdata/alignments/calamodulin_2.txt
2cec07f111c114b62e74dc5fda6d5b17 *extdata/alignments/phosphorylation_1.txt
610cceb5049e7cca41221bce75f23d95 *extdata/alignments/phosphorylation_2.txt
c78d0348b409bfaf488df306859666da *extdata/alignments/ubiquitination_1.txt
cdce4193c5fadfe94bc64bd20fd082b5 *extdata/alignments/ubiquitination_2.txt
8c38fdb2ea172dabd1ab4c45ddf5a4cb *extdata/homer/CTCF_SatelliteElement_Zf_CD4.motif
774f4bdd1a44d8c272a63396d7e9456c *extdata/homer/CTCF_Zf_CD4.motif
eaaac1b0e8624dce03d814d29ab7a8ac *extdata/homer/Max.motif
fd5d4c365e7e5de7f31f2adcc8df2a53 *extdata/homer/c-Myc.motif
ccc5a3fef2d1a0e70be046cce43dc22e *extdata/pfm/ctcf_jaspar.pfm
6093b56d5f72163054afddfa7e1013e3 *extdata/pwm/GM12878.pwm
ac0ed6904d023f00b38f953060434399 *extdata/pwm/H1-hESC.pwm
5c049781855e3d08d476eb735e438438 *extdata/pwm/HUVEC.pwm
56e78321b415f4e5f39cb226ddb3915c *extdata/pwm/HeLa-S3.pwm
f340a2bd526bb8cfe484a06f41e0923e *extdata/pwm/HepG2.pwm
a55a478ca869b172f945c7e004de9aba *extdata/pwm/K562.pwm
7256e36aa113e2ef2f25345cdf816682 *extdata/pwm/MCF7.pwm
d7bade5c657d185fc7c4b7e15199183b *extdata/pwm/NHEK.pwm
1e417b7456962e38375fdb5de6c67bb4 *extdata/pwm/ProgFib.pwm
d1d4f1b8a6f4aa46a8181c7d85f2d199 *help/AnIndex
582a1559f5b84de8bd0022efa77e21af *help/DiffLogo.rdb
d07464511a09de1462f19c8a3ee26a9d *help/DiffLogo.rdx
da3f1f6356e3ed8afe6793d178a2a031 *help/aliases.rds
dab12e3c29e7c7275af65a511518c6a8 *help/paths.rds
3a724639aab21d0209aa1dee36754344 *html/00Index.html
e27b6eab29c6d5d5b1ded2c2749d527b *html/ASN.html
69f453bbd08633f52fea8ed1f100b2b4 *html/Alphabet.html
ac772bd30f445b1db6581563969e322e *html/DNA.html
eb7ea05ee31246ecb5bfb677754791e2 *html/FULL_ALPHABET.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2140ddc7a20f59a640f9cc630a91775a *html/RNA.html
72f6793ea7a7f78b9c14acff46719cc3 *html/alignPwmSets.html
5ebdbdc984c4155fe08931c61f279ce7 *html/baseDistributionPwm.html
df950d4683f85992a9bd2f853cd56345 *html/calculatePvalue.html
ea61376c1609fc40823a0a8162f1aaed *html/createDiffLogoObject.html
11e01e13cb72d18743f756e091781943 *html/diffLogo.html
3a57bb5888cbc2f561d4ac6995c5c7c6 *html/diffLogoFromPwm.html
f47ba76095c89690049baef17b65808b *html/diffLogoTable.html
bad9cb787776f03c57e3f394f33e131e *html/diffLogoTableConfiguration.html
2715d3c39f7f83f69215aab66a18f2c0 *html/differenceOfICs.html
61f2bd5c3c76a442bedd2562cb48d9b1 *html/drawDiffLogoTable.html
f33a2e91c905dce309f6e991d98f9fd1 *html/enrichDiffLogoObjectWithPvalues.html
89679de53cee30dab3032439062318f6 *html/enrichDiffLogoTableWithPvalues.html
a39d5587126420187f0e1556a839a9be *html/extendPwmsFromAlignmentVector.html
799f85c8bf4d75ea5fda81a468225357 *html/getAlphabetFromCharacters.html
bd2ad7b336956f403c79caa83adfcadf *html/getAlphabetFromSequences.html
6e4765785d0ec822042cf39fa288e820 *html/getPwmFromAlignment.html
aafaa86d2d380cc96b9f3c73c9396294 *html/getPwmFromAlignmentFile.html
ccdc94a7c4601b6d2347b0ee55c50239 *html/getPwmFromFastaFile.html
9a729d373a337e0ce44641854f8d7d56 *html/getPwmFromFile.html
c3a40975bf06449e9ecbceb575b48099 *html/getPwmFromHomerFile.html
da3de3f9a96bea5845b5b711da0fa726 *html/getPwmFromPfmOrJasparFile.html
048ca15e0ca73032e07e57f2391f1caa *html/getPwmFromPwmFile.html
dcb1bf34184c582da8d414d75ead00b7 *html/getSequencesFromAlignmentFile.html
b4a00f6dcd1ee19cb4c6ebf20cd8b1a5 *html/getSequencesFromFastaFile.html
a56a3ab93d22f2f1d630dfa0d1bd71c6 *html/informationContent.html
06dbd0249d8276631b907dc235e8f7f5 *html/localPwmAlignment.html
f1a1734c60f2afb948c08c2fd948e2df *html/lossOfAbsICDifferences.html
0c7964f7c17362d4ad3e8422caaba0ef *html/multipleLocalPwmsAlignment.html
b038d96e84d7a6ee1783506c5652fbde *html/normalizePWM.html
4893e9e7b45e926445b006069e9da482 *html/normalizedDifferenceOfProbabilities.html
517e0f18f74eca6e2b1b6535d8a82dec *html/prepareDiffLogoTable.html
4208b4ca8eaba4f8887422b1ea82820c *html/probabilities.html
250cae3c16735959bf3903217e240e0c *html/pwmDivergence.html
a56839b03f02d54a2f176f32d3c76386 *html/pwmsDistanceMatrix.html
bd0059f5d9f63e5c589517b1d155b928 *html/reverseAlignmentVector.html
fa5e3155ae6fa184ae64a43ca62cf077 *html/seqLogo.html
d9ab098913fa6f782cc1158754fcb8cc *html/shannonDivergence.html
1a1065ef364f5b92d2ff43ccd298787f *html/sumOfAbsICDifferences.html
ff8496b6a19573352b33aed05bafc6c6 *html/sumOfAbsProbabilityDifferences.html
31835cfbb82443d187a903f6fe103d9d *html/sumProbabilities.html
8d3d6f55c1018b78535a58d57129cf1a *html/switchDirection.html
3106755a959d36e6d76f595d1596d4b7 *html/twoSetsAveragePwmDivergenceFromAlignmentVector.html
