enricher_internal {DOSE} | R Documentation

## enrich.internal

### Description

interal method for enrichment analysis

### Usage

    enricher_internal(gene, pvalueCutoff, pAdjustMethod = "BH",
      universe = NULL, minGSSize = 10, maxGSSize = 500,
      qvalueCutoff = 0.2, USER_DATA)

### Arguments

`gene` | a vector of entrez gene id.
`pvalueCutoff` | Cutoff value of pvalue.
`pAdjustMethod` | one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"
`universe` | background genes
`minGSSize` | minimal size of genes annotated by Ontology term for testing.
`maxGSSize` | maximal size of each geneSet for analyzing
`qvalueCutoff` | cutoff of qvalue
`USER_DATA` | ontology information

### Details

using the hypergeometric model

### Value

A `enrichResult` instance.

### Author(s)

Guangchuang Yu http://guangchuangyu.github.io

[Package DOSE version 3.12.0 Index]