counts {DESeq} | R Documentation

## Accessors for the 'counts' slot of a CountDataSet object.

### Description

The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (gene or the like), and one column for each sample.

### Usage

    ## S4 method for signature 'CountDataSet'
    counts(object, normalized=FALSE)
    ## S4 replacement method for signature 'CountDataSet,matrix'
    counts(object) <- value

### Arguments

`object` | a `CountDataSet` object.
`normalized` | logical indicating whether or not to divide the counts by the size factors before returning.
`value` | integer matrix.

### Author(s)

Simon Anders, sanders@fs.tum.de

### Examples

       cds <- makeExampleCountDataSet()
       head( counts( cds ) )

[Package DESeq version 1.38.0 Index]