Plot.cluster.module     Plot the DEGs modules
Plot.deg                Plot the DEGs before or after cross-validation
Plot.deg.specific       Plot the DEGs before or after cross-validation
Plot.deg.specific.test
                        Plot the DEGs before or after cross-validation
Plot.seed.module        Plot the DEGs modules shared by patients
ann.er                  ER status annotation
bi.deg                  Transformation an expression matrix to binary
                        differential expression matrix
cl                      Binary patient annotation (part)
cluster.mod             seed-based module analysis (part)
cluster.module          Predict the DEGs modules shared by patients
deg                     DEG matrix of breast cancer (part)
deg.spc                 The patient-specific DEGs (part)
deg.specific            Predict the patient-specific DEGs using
                        bi-clustering analysis
exp                     expression matrix of breast cancer (part)
module.compare          Compare and plot the overlap among predicted
                        modules
module.curve            Display the patient-gene numbers during
                        bi-clustering analysis
module.exact            Extract the patients and genes from module
module.modeling         Predict and report the proper gene-patient
                        number of bi-clustering analysis
module.overlap          Plot the overlap among predicted DEG modules
module.screen           Screen the feature patients or genes in
                        predicted modules
res.mod1                clustered module 1
res.mod2                clustered module 1
seed.mod                seed-based module analysis (part)
seed.module             Predict the DEGs modules shared by patients
summarize.cluster.module
                        Summarize the DEG modules
summarize.deg.specific
                        Summarize the patient-specific DEGs
summarize.seed.module   Summarize the DEG modules
