| cytobank_to_gatingset.default {CytoML} | R Documentation |
A wrapper that parse the gatingML and FCS files (or cytobank_experiment object) into GatingSet
## Default S3 method: cytobank_to_gatingset(x, FCS, ...) cytobank2GatingSet(...) cytobank_to_gatingset(x, ...) ## S3 method for class 'cytobank_experiment' cytobank_to_gatingset(x, ...)
x |
the cytobank_experiment object or the full path of gatingML file |
FCS |
FCS files to be loaded |
... |
other arguments |
a GatingSet
## Not run:
acsfile <- system.file("extdata/cytobank_experiment.acs", package = "CytoML")
ce <- open_cytobank_experiment(acsfile)
xmlfile <- ce$gatingML
fcsFiles <- list.files(ce$fcsdir, full.names = TRUE)
gs <<- cytobank_to_gatingset(xmlfile, fcsFiles)
library(ggcyto)
autoplot(gs[[1]])
## End(Not run)