cytobank_to_gatingset.default {CytoML} | R Documentation

## A wrapper that parse the gatingML and FCS files (or cytobank_experiment object) into GatingSet

### Description

A wrapper that parse the gatingML and FCS files (or cytobank_experiment object) into GatingSet

### Usage

    ## Default S3 method:
    cytobank_to_gatingset(x, FCS, ...)

    cytobank2GatingSet(...)

    cytobank_to_gatingset(x, ...)

    ## S3 method for class 'cytobank_experiment'
    cytobank_to_gatingset(x, ...)

### Arguments

`x` | the cytobank_experiment object or the full path of gatingML file
`FCS` | FCS files to be loaded
`...` | other arguments

### Value

a GatingSet

### Examples

    ## Not run:
    acsfile <- system.file("extdata/cytobank_experiment.acs", package = "CytoML")
    ce <- open_cytobank_experiment(acsfile)
    xmlfile <- ce$gatingML
    fcsFiles <- list.files(ce$fcsdir, full.names = TRUE)
    gs <<- cytobank_to_gatingset(xmlfile, fcsFiles)
    library(ggcyto)
    autoplot(gs[[1]])

    ## End(Not run)

[Package CytoML version 1.12.1 Index]