read.gatingML.cytobank {CytoML} | R Documentation

## Parser for gatingML exported by Cytobank

### Description

The Default parser (read.gatingML) does not parse the population tree as well as the custom information from cytobank. (e.g. gate name, fcs filename).

### Usage

    read.gatingML.cytobank(file, ...)

### Arguments

`file` | Gating-ML XML file
`...` | additional arguments passed to the handlers of 'xmlTreeParse'

### Value

a graphGML that represents the population tree. The gate and population name are stored in nodeData of each node. Compensation and transformations are stored in graphData.

### Examples

    ## Not run:
    xml <- system.file("extdata/cytotrol_tcell_cytobank.xml", package = "CytoML")
    g <- read.gatingML.cytobank(xml) #parse the population tree
    #plot(g) #visualize it

    ## End(Not run)

[Package CytoML version 1.12.1 Index]