4ad19164b71f48a159aee0245eee9ad2 *CITATION
c4d75c6418a8bf0319216761c768ad56 *DESCRIPTION
bdebbe6a515e01b9152333436324d824 *INDEX
7ef96c3b02f9e17b9b99adfe56a3295b *Meta/Rd.rds
cdfe4fa1020a778c119672473b78900b *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
6b6816b38504a7acbd07a40cdb3b1732 *Meta/hsearch.rds
47b6597ce821135f605a664ae028e1d4 *Meta/links.rds
ecabf18b1d8b3227936826e7801150aa *Meta/nsInfo.rds
6445822904d1a2f81a0fc85e24914d24 *Meta/package.rds
fc26fee67c7956a07bea214da4d73972 *Meta/vignette.rds
86c0b651bfa817b420bdda5df31a7ac4 *NAMESPACE
590504cacc0084a282f24e3746aedeb4 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/CrispRVariants
0fd1b04bc6870a4f28ce30cd833c312d *R/CrispRVariants.rdb
7f879a5f7a8176081ba8b3321b170b1b *R/CrispRVariants.rdx
06383998d1b42946b49070071ef29f0c *data/Rdata.rdb
2bc7cd0496f988d30eb6d04d0a71527d *data/Rdata.rds
1eb34f63b50b276bf8afc664bba2001a *data/Rdata.rdx
80f8c2fbcf76e450958d2c32265b34fc *doc/index.html
c26bf75be321965449551d4dffa6de14 *doc/user_guide.R
030ad422de6cac5ecb1ef5c3ceaf6fc0 *doc/user_guide.Rmd
1b28f124179e28fb375b7849160a3a8a *doc/user_guide.pdf
65dcdf1d72c2cb6532b582faf9648242 *extdata/Danio_rerio.Zv9.73.gol.sqlite
3d09e19e1a84f4163a94c7ac41b4d7a1 *extdata/GRCz10_81_ptena_txdb.sqlite
cb32a40b50b777c9872e74844182b9cc *extdata/IM2033.ab1
31f41ba5b5f3ffe65a72638ac48d59ee *extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
87fbf13a52e1801266cb385c7919a4e9 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
a5faefe3c25efbb5817f4235b9b7ce57 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
aa172362f53fb84dfc85ff43e8b58232 *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
64f942fe93f6cb37549443b020be66bd *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
dbfe81d150812e6f46063d6e3af8a7e9 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
eee2ae352b4a9fedb9ceff871687b1a8 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
236be679c9bc2a2f812ff382455e885c *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
eada6440c415bffc39581741c9d0a790 *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
4a3d7a75593c3a87d833e05158e4f380 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
c3644513e0f3ccf53022a838cac19fb1 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
a049fec3b3743cdbcab988593e07fe95 *extdata/bed/guide.bed
2d865f43e37fb89160b910b38bf2d5d6 *extdata/cntnap2b_test_data.fastq.gz
cf0e50eedb184b713c6f3d8a5d134b95 *extdata/cntnap2b_test_data_guide.bed
de83e1ebb8d157390a22a65d54f41f23 *extdata/cntnap2b_test_data_s.bam
f02d12f0ea6761b0eccc19df7a7a1b6c *extdata/gol_F1_clutch_1_embryo_1_s.bam
25956b49d20dd443e4ce9ca7e943796e *extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
15010247fef191cf1d68d54cd20677da *extdata/gol_F1_clutch_1_embryo_2_s.bam
d0cdaeb0fda0197a6d62454d1c39b2ca *extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
853c55081cbbc183fc46976430fa650e *extdata/gol_F1_clutch_1_embryo_3_s.bam
cc78c8e5d1d87f8571a6b71e1bd555ee *extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
4cbc3ed5188a19125e6d50a27ff029e6 *extdata/gol_F1_clutch_1_embryo_4_s.bam
1ab0458554627ac4566378c536bc12a4 *extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
9b27d523742d463169189d8c72060f7a *extdata/gol_F1_clutch_1_embryo_5_s.bam
6ef0cf85fe25ad4862a63f1aec0cf394 *extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
411c8683cbd70b8d9cb9801ac5999b38 *extdata/gol_F1_clutch_1_embryo_6_s.bam
a1b074693d1b5052595a594e37b3ae96 *extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
d677e388666d320a0dc80e187b4d30db *extdata/gol_F1_clutch_1_embryo_7_s.bam
f87f533910ac9896d9e4b797a885d18c *extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
9e6c0eb2312197f90d0b2f352dda6b10 *extdata/gol_F1_clutch_1_embryo_8_s.bam
3a778946d9df16b7926f382258402dde *extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
672eab0fa40051a31a81c9c174670eb8 *extdata/gol_F1_clutch_2_embryo_4_s.bam
1b157a9c4b418311efc6caabec3cfa38 *extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
89b05c3e000a2e938ea38a1f90366ac2 *extdata/gol_F1_metadata.txt
01243899f4f39295d5efa23b382c3949 *extdata/gol_F1_metadata_small.txt
a8ef6a3063c96abb61e28f05667eb361 *extdata/metadata/metadata.xls
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af3584ce04196fafd561da7cd20608a7 *help/AnIndex
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5864194740d78f9820fb39a72d059bc3 *help/CrispRVariants.rdx
b5658614758d63cc2552f3069983f15c *help/aliases.rds
d10a300dd2fd1385e8c2d632d2b0be0a *help/paths.rds
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71682438a7ca5624796aeb57a55553e5 *html/CrisprRun-class.html
f9da74c137c28a236d85817a13a9a05a *html/CrisprSet-class.html
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a5668634158114707686670d7f4a90f2 *html/addClipped.html
b5e0dc8630ac6d4350d171a6a6213311 *html/addCodonFrame.html
3a0a5ad9e04c9082d66481696e513303 *html/alleleLabelsHelpers.html
961dd42d605c9ebe350caf5f2082cde3 *html/alleles.html
906f4569e60928d1bfd331279467f410 *html/alns.html
4d5dda836a7c18251cea08a207201bc5 *html/annotateGenePlot.html
333a63c4f3392318aceb8c7535fb1dbc *html/arrangePlots.html
44700d2f7c44923b15d51486782acf35 *html/barplotAlleleFreqs.html
1c5d24e31e3d78076f2a0a2b4ae643af *html/collapsePairs.html
6d2372c2463e392f449dfb5a8c2044bd *html/consensusSeqs.html
3ff8bbc408f37573e68a94f55fe7ea2d *html/dispatchDots.html
21f8c333e82c1f23ca308cf0a75268ec *html/excludeFromBam.html
0b2f20cccf2ac0c8dbd52ac919c08a58 *html/explodeCigarOpCombs.html
e6000fcd5ff25ef7631ec4f73706fc02 *html/findChimeras.html
8d2b9e2cce1d9b44e2340fee07cb2d0a *html/findSNVs.html
c8bb1949f2ec65d1cfad97e4601b67e1 *html/getAxisCoords.html
8084267b8517412b5f8e5c6822c4bee8 *html/getChimeras.html
24bf1fecbf298d4a22ab451b44c23d42 *html/getInsertionsTable.html
11e823a8fb55ec689d1af6e80d68f78b *html/gol_clutch1.html
5aeb285e6e1de9982c1fb2a982c3830e *html/indelCounts.html
a657c7c33d27c9ac8c2c91697480e782 *html/indelLabels.html
5a1a30a33308deccbf52b5dc932892c3 *html/intersperse.html
11b34ee8e6ac5bf7222ab18a6d8e4d52 *html/makeAlignmentTilePlot.html
5cb4ff8840756c1dad5f19edead1fd13 *html/mergeChimeras.html
18a4fad0997d4886123ae96ae63c74c5 *html/mergeCrisprSets.html
90bd442c3a27d1c24160f49c33b6c8cb *html/mismatchLabels.html
b80b5cbd2b62b8575ab85bd7b2fa4114 *html/mutationEfficiency.html
8b99a8c93519e8f2a58c1c197e2b0545 *html/narrowAlignments.html
dc8a1dd4fea93a505a16b48208e42b43 *html/plotAlignments.html
23487768b0834efd3b858808c2abfec3 *html/plotChimeras.html
1266898d28e7568556cc6179ad21694c *html/plotFreqHeatmap.html
4d061706d72d49148353cfd2f937a0f1 *html/plotVariants.html
3148f23f74629b98bd02c38de9a44db9 *html/rcAlns.html
f8aef48ca3d261659f4a3452a156cddc *html/readTargetBam.html
065dfc7e50b54c3c030be62b5b562c2a *html/readsByPCRPrimer.html
dfb95c41b99b9a669b4599d4410ca045 *html/readsToTarget.html
fe97e540e236add9e035e6c24ea4bd4c *html/refFromAlns.html
64c5fea2a6dcfbde813f2d34427b8d25 *html/reverseCigar.html
a9a3a441752beed78f218d7c2899e2a3 *html/rmMultiPCRChimera.html
a433b9b839860ea57c49bdde9816a8ef *html/selectAlnRegionsHelpers.html
6788dee38b95212852365a9116634841 *html/selectOps.html
aaad654168c654f8a06a0ca85dd41d76 *html/seqsToAln.html
7f38c04da73686819f530bd74edbd95f *html/setDNATileColours.html
2fb8334709e9fff253af31e4266f290f *html/setMismatchTileColours.html
7071292a6e360a053d2f5201137e38ca *html/transformAlnsToLong.html
c7c49c08d7f136f8ba331955287b9817 *html/variantCounts.html
652b35a66529b2560cf189d069a38c23 *html/writeFastq.html
