ae3045b5c74b21f12b54816495634ced *DESCRIPTION
04abe9acd244279b6c0e43be816f967f *INDEX
6d060d865fc8ddaff8cde1230dde463a *Meta/Rd.rds
989edc50dffd590a54c8c2ab86576cf9 *Meta/features.rds
9b5b35ab994faf69c486f14d4496dd48 *Meta/hsearch.rds
f9cca1659198dde2df07c737eba33c63 *Meta/links.rds
58191e843987ecf250ad345bf6da02c3 *Meta/nsInfo.rds
a8d21b4d5f014ba5c1a9c324844ce8cd *Meta/package.rds
42504da5b6bfafa51a37a6e8eb1ee6f4 *Meta/vignette.rds
729c50955a736ca2094cfdcab65e564b *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CopyNumberPlots
6dd7cdd2933edc7286ab0bb235c68f9f *R/CopyNumberPlots.rdb
c6a692bce0cdd83c01b4a5eba0b310bd *R/CopyNumberPlots.rdx
a319d31378583f387ade3cacf9283e46 *doc/CopyNumberPlots.R
2ea09613c3512a9a27afcbf47cf6f8b6 *doc/CopyNumberPlots.Rmd
6d79a5fdcd5eff73e2b3d83688b6cadc *doc/CopyNumberPlots.html
7a9b1e5148a20b54afee01ead91772ae *doc/index.html
008d3351fb8c41e512fba63b74543b6d *extdata/CNVkit_output.cns
4136f91f446256a68f86b278edab7c6f *extdata/DECoN_output.txt
66c11b914cca097fab4022bc607133b5 *extdata/DNACopy_output.seg
9fc4fa5f4efc34e93e1a0a11c79099f8 *extdata/S1.rawdata.txt
fc90709b17e1210e4373edf2f0d4158d *extdata/S1.segments.txt
7147d6dc743cd42b66256bf8b1e4fce8 *extdata/S2.rawdata.txt
c712bb81fbac1d6b02135695a720369c *extdata/S2.segments.txt
5ffd79cbbcd65077001bff19b41992c8 *extdata/S3.rawdata.txt
d1a7ee3e9bc991c27b9fdc3fb56bde2a *extdata/S3.segments.txt
91efe67aa6d6d76729238e8c81ba5470 *extdata/SNP_example_data.csv
01f353d3efcb69fff9ab065d0ac38079 *extdata/cn.mops.segmentation.csv
5161203ed876bce6f1bc20c86a8cba6a *extdata/example.vcf.gz
644d3c7029cd7f5b79da1b9564a8e34d *extdata/example.vcf.gz.tbi
df5dc01ccd1592979225e3e2474c21ad *extdata/pennCNV.rawcnv
888d6b9933b6b99134e25ea40b80ac17 *extdata/snp.data_test.csv
8fbda5278bcab786685c0464c0f461e2 *extdata/snp.data_test2.csv
ee13d90cbb5c476ef154dc5b5faaa70c *help/AnIndex
ae32a797be004363d22013fd31852fa8 *help/CopyNumberPlots.rdb
911f59cfedd28e8a05d20f65e61848e8 *help/CopyNumberPlots.rdx
ab5d09a8b1f1522e1b86d8d67f77c4fa *help/aliases.rds
c600b15e135720a1ad8d67cb5655bbef *help/paths.rds
f4eaefa29ff398ea25edbb853a790434 *html/00Index.html
78c17ef1227458d6f68f510c5692280c *html/EnsemblStyle.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
04028b3607ce319e0868b649d7d8cdd3 *html/UCSCStyle.html
85544e098763b74bff2477559e93fe6b *html/Ztree2Hclust.html
7db87e4d8abb2e4fd375be8c1e14c523 *html/colByCopyNumber.html
5d624f1a3a64bd5f17e0bce6630a7984 *html/computeHclustPlotOrder.html
6712f048f4119409f25761fc42a7bbb8 *html/getBAFColumn.html
eb1833b028bbaf7745e94d5d7e155bc8 *html/getChrColumn.html
b06720260b10d85f61e9153e3a53904f *html/getColumn.html
1b75e8590cd0cb22fd1b1e44ef140cb2 *html/getCopyNumberColors.html
487ca3ab2a6cf69443e1909091964992 *html/getCopyNumberColumn.html
3e43eb73e917b1a7e6b98d1b7d22eba8 *html/getEndColumn.html
aa2bad37898e8260f5b15cbd9588595b *html/getIDColumn.html
16066eb9003776f00c464d983c0cec7e *html/getLOHColumn.html
501d9d1820753e81c7c2d64160c471d2 *html/getLRRColumn.html
ef3adbe8c81809bf8fcc1de3740e5b36 *html/getPosColumn.html
9c2bff9bbbda8b944aea93825d52d575 *html/getSegmentValueColumn.html
5dbd9e73fe54bc52217797375867966d *html/getStartColumn.html
4aa69350a4657d708ef680391377cf16 *html/loadCopyNumberCalls.html
864a6e78d138f8b644d3ac5772c40393 *html/loadCopyNumberCallsCNVkit.html
80d30813c5f1deeb7e69ec776d4be591 *html/loadCopyNumberCallsCnmops.html
33f45f0c8229eca13d161f9b34a5c4b2 *html/loadCopyNumberCallsDECoN.html
83a5e54e793238a8617debbfdf89404c *html/loadCopyNumberCallsDNAcopy.html
e0c934d17c25d6a38c23f909da556407 *html/loadCopyNumberCallsPanelcnmops.html
8daa43ad089cdf5bee6d6ae623ae08ab *html/loadCopyNumberCallsSeg.html
fdf5da53afbb121a20353f01ef0a2f3b *html/loadCopyNumberCallspennCNV.html
cef2af395061769037b945dd75cb90bf *html/loadSNPData.html
6540ee1d3fa5d0eb01a102f7e7adb659 *html/loadSNPDataDNAcopy.html
b92c3c8545aebca1951e12f78b5a395e *html/loadSNPDataFromVCF.html
f1ff9f5611cde8473388557f680a7724 *html/plotBAF.html
7e70eb018dcb8c80901e7be9803c3262 *html/plotCopyNumberCalls.html
5792319116e00397f0d40135439ef566 *html/plotCopyNumberCallsAsLines.html
ede3a8d52e4bfec42a1cdbaef61aeee2 *html/plotCopyNumberSummary.html
083e2fa62133ddbd18ff4ff1ec964a55 *html/plotLRR.html
669d9352ab349265152fcb01f3e95aa2 *html/plotSingleCellCopyNumberCalls.html
9844374e3e172fa7ebd1d98445fbc4d8 *html/plotSingleCellCopyNumberSummary.html
9038243d38d5f43baf2204366f071ece *html/prepareLabels.html
86fec7d1703cd29bf05bf92b222dc12c *html/readHDF5Ztree.html
71cf6df28ef57f2453470bebbf96ccca *html/removeNAs.html
e4d8650248abf444e9c0acd8839e4f63 *html/transformChr.html
