accessAnnotation	accessors
accessID	accessors
accessNeutralLosses	accessors
accessors	accessors
accessPolarity	accessors
accessPrecursor	accessors
accessRT	accessors
accessSpectrum	accessors
addAnnotations	addAnnotations
as.MS2spectrum	as.MS2spectrum
cossim	cossim
cossim,MS2spectrum,MS2spectrum-method	cossim
cossim,pseudospectrum,pseudospectrum-method	cossim
distanceMatrix	distanceMatrix
extractMS2spectra	extractMS2spectra
extractPseudospectra	extractPseudospectra
featureList	Featurelist
findFragment	findFragment
findNL	findNL
getSimilarities	getSimilarities
getSpectrum	getSpectrum
HCplot	HCplot
HCtbl	HCtbl
intensity,MS2spectrum-method	MS2spectrum-class
MDSplot	MDSplot
mergeMS2spectra	mergeMS2spectra
mergeSpecList	mergeSpecList
mergeTolerance	mergeTolerance
MS2spectrum-class	MS2spectrum-class
mz,MS2spectrum-method	MS2spectrum-class
networkplot	networkplot
neutrallossPatterns	neutrallossPatterns
OPTICSplot	OPTICSplot
OPTICStbl	OPTICStbl
peaksCount,MS2spectrum,ANY-method	MS2spectrum-class
precursorMz,MS2spectrum-method	MS2spectrum-class
pseudospectrum-class	pseudospectrum-class
rtime,MS2spectrum-method	MS2spectrum-class
show,MS2spectrum-method	MS2spectrum-class
specplot	specplot
splitPolarities	splitPolarities
writeFeaturelist	writeFeaturelist
