5e3f36a1dba1bfe642c7a8a433cdb679 *CITATION
a6890a18c8301fddfd85ca166e89d798 *DESCRIPTION
12346b410d158dcb9053b964ee23a8e2 *INDEX
37d071434d0d4892bd4744f40e01063c *Meta/Rd.rds
1fcd1e39ef261274aefec32008ead15a *Meta/data.rds
989edc50dffd590a54c8c2ab86576cf9 *Meta/features.rds
00a4f01773d3f8325903cc792a362a92 *Meta/hsearch.rds
d7dbd502f4c19c0c37a15161cfb06be6 *Meta/links.rds
a40a8f20e93a7eeab997a282fd5c5fde *Meta/nsInfo.rds
8a90d5e7807c8dd76cd109d82438bbdc *Meta/package.rds
61cd3189961018f5637a94d90cde48d8 *Meta/vignette.rds
99d0696a34dc1068d0923ff5b4131de4 *NAMESPACE
73815d3b77ade5b3550dd9327eaf75f1 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPpeakAnno
7a46282f319becddcc307579806fd9e3 *R/ChIPpeakAnno.rdb
39416b2cea878810307a22507b651d62 *R/ChIPpeakAnno.rdx
cd9ddac3695cc465aca76c73c97dcb09 *data/ExonPlusUtr.human.GRCh37.rda
110fcc894c304d282317e08f94b81546 *data/HOT.spots.rda
dfcd885158e450ca43c4b9b93c6cda3d *data/Peaks.Ste12.Replicate1.rda
9eae7eb9ded4f80b9c77819261874516 *data/Peaks.Ste12.Replicate2.rda
d39cd7fe68d03d0bd55fdfa85d5285d1 *data/Peaks.Ste12.Replicate3.rda
1f72e6fdc6f424d51ef9a0a9fd47cde5 *data/TSS.human.GRCh37.rda
e8d4d3e3a91cd42adcf34ce018a65f55 *data/TSS.human.GRCh38.rda
a3adc6b31def1efc300fda0085005a5b *data/TSS.human.NCBI36.rda
0c3ef2fd321a47b9ed4d1a0ab63044ff *data/TSS.mouse.GRCm38.rda
f7a450954ac6d027fecb6780084976fb *data/TSS.mouse.NCBIM37.rda
7c615e60ca62bd77cfce469f30b28f7e *data/TSS.rat.RGSC3.4.rda
d1c0f799c823b46b4faf59a93f4f48db *data/TSS.rat.Rnor_5.0.rda
ba273cde7cce3343d816e625a393f9e2 *data/TSS.zebrafish.Zv8.rda
0b5cf3968954c7c36028169c301e5cfe *data/TSS.zebrafish.Zv9.rda
9f2f4ef11095f06779286d778e90b0f0 *data/annotatedPeak.rda
54d5fd6de4d6396e72b72670e9055c3b *data/datalist
483b9cad06866b432d5e0accb6f21e63 *data/enrichedGO.rda
91baeaa5f0b9dcd1507b22219aa41d88 *data/myPeakList.rda
1037ad6e69295171bcea7cbf40faad3a *data/wgEncodeTfbsV3.rda
ad93cddafecd9a35b07bdd3c3482606a *doc/ChIPpeakAnno.R
28012899d69a5eec5bf51578a1eea768 *doc/ChIPpeakAnno.Rmd
0b34596cbd777ff1567dd444ce969f9a *doc/ChIPpeakAnno.html
e3b4c3ce4f5f308e8db8b0321802caaf *doc/FAQs.R
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1ea2ffbb93906e2986d732d41563f996 *doc/index.html
ad706af2cf6906e078aadc8aba52462e *doc/pipeline.R
360f99bf5290715577cc802edb59555d *doc/pipeline.Rmd
78377f11e2d2ad2bce5a19cf8534e06b *doc/pipeline.html
1fa523e09df39253a228e3444d014b52 *doc/quickStart.R
959452ada663bbe77639b3bf778e13ae *doc/quickStart.Rmd
e0c5ee9f6faa8905694977438efa10c9 *doc/quickStart.html
51a1074f5098d47f6e68834d05a0b052 *extdata/GFF_peaks.gff
bbd79f3bd4539df278d4d54a6a1c5b20 *extdata/GSM700906_AA86_vs_INPUT_WS170.bed
147f05d83bd1affe323c3166757e6d7f *extdata/GSM700907_DAF-12_TAP_vs_INPUT_#1_WS170.bed
622ff4061df9df9f9462f1fab72a63bd *extdata/GSM700908_DAF-12_TAP_vs_INPUT_#2_WS170.bed
70e0739a061fdcfdc7183e1cfd6b35a3 *extdata/GSM700909_DAF-12_TAP_vs_INPUT_#3_WS170.bed
070927932b507d9363c00f191c2a8c1f *extdata/MACS2_peaks.xls
3ba1b6678961b0d259ace72a677725ef *extdata/MACS_output.bed
c198dabb98b6a234cc5dedf2257eb76e *extdata/MACS_peaks.xls
ca1579eeffe79266a6a6d67285d06134 *extdata/TAF.bigWig
5c1ddb53e950aa7cee0c3d60f4b795c6 *extdata/TAF.broadPeak
405b734ee40b942b975426a8bb7a5905 *extdata/Tead4.bigWig
c519323cc98c34ce499847e01b126067 *extdata/Tead4.broadPeak
abf55e5af87269799387b8e534e54f2c *extdata/WS220.bed
9aa17877afeab3521a50d4be9a5afd8a *extdata/YY1.bigWig
3f580886a46268c7acb09d10cd49e0c8 *extdata/YY1.broadPeak
ed4e456fedcc44366e32b10701f8afb7 *extdata/annotatedPeaks.2.10.0.rds
20e9bb1fe398ccd866238d08461904ab *extdata/cvglist.rds
68ced04855781f8e713bbe6e579c20a3 *extdata/examplePattern.fa
37c4a0a35b151b8d32a1daee391c47a9 *extdata/gadem.rda
35fc20f4e80afc69c814b0548c1be2b6 *extdata/guide-seq-peaks.txt
07cb1ce6d32a969cf6d5fda3b5492559 *extdata/peaks.narrowPeak
c2b7832fbd74395028b2e09c880e5bf3 *extdata/peaks_hg19.bed
9cae92f469e5acdf71a6195ee3de7479 *extdata/ref.gtf
9d5062a07d7c3e9db2e515494f35487c *extdata/test.bed
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9ed847f674315604026384f1d63b13a6 *help/AnIndex
904d5998f1e1e4d0825c8d24b5486569 *help/ChIPpeakAnno.rdb
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50a940653856501cd2ed3eb859f00c19 *help/aliases.rds
81c9092766eeb84ef6aa02f7db058335 *help/paths.rds
9e3e0e79204b91da88f397271b048d35 *html/00Index.html
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1f460091dbb7fdc978d3ca07f964c836 *html/GFF2RangedData.html
bbb11bc706b5de7b14f3d8f7038c8588 *html/HOT.spots.html
bc08ad23e09933836733df05ae5016da *html/IDRfilter.html
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3b3ff5516e4f2d16a78417ce5a79dc0c *html/Peaks.Ste12.Replicate2.html
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b6763e6916890c631fdc3f2643803b1a *html/R.css
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087722217c9fda5a18b2f3dc1f160b31 *html/TSS.human.GRCh38.html
427dff17c50473f3d26d5cce502e94f2 *html/TSS.human.NCBI36.html
4d1892f7c197255585473713ed21424f *html/TSS.mouse.GRCm38.html
f99481f5b880d61c2a5e7eff8e6f8dcd *html/TSS.mouse.NCBIM37.html
cf46d097c4a6d1256d9cc04fe140d2ea *html/TSS.rat.RGSC3.4.html
662ffa5857db23b6a21941cba7b83ecb *html/TSS.rat.Rnor_5.0.html
090b913b7e9b404e1fc7ab8cda783551 *html/TSS.zebrafish.Zv8.html
a49fb051228ad58b21c6a6a3dbb358cb *html/TSS.zebrafish.Zv9.html
a72f396712ea518d5f15077535edf3d7 *html/addAncestors.html
82038d6cbd35656e8ec528b44c086269 *html/addGeneIDs.html
7482c2f64c38ca0e0ab7686a46bf5a6e *html/addMetadata.html
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17083f568867ea0077e4a47ecdaaf3ac *html/annotatePeakInBatch.html
79053335ba91af185626950d2cef0f69 *html/annotatedPeak.html
1260d13ee6fcac78ff3f3667b6f59706 *html/assignChromosomeRegion.html
99bdc3b0a5e14922c6a902563b4e89e7 *html/bdp.html
3db5453902d9a8c495a50aefffda5b12 *html/binOverFeature.html
96e3fbf16695069f59b16f11d9266189 *html/binOverGene.html
8c871222e1d995c54f870683008cfa54 *html/binOverRegions.html
49cb005f8f0e70830e476e419a8d9928 *html/bindist.html
c3464c69ab4072d2a323a55787112058 *html/condenseMatrixByColnames.html
f6656e0aad0680aecc6c8c7c442e7c66 *html/convert2EntrezID.html
dfab638c44a8c9304f027963e55f495c *html/countPatternInSeqs.html
07a0409649747109e41375b9160f83a8 *html/cumulativePercentage.html
05494d84fc7c72d01f6137a5fa3939c9 *html/egOrgMap.html
58b42147f454f112fa2694161dc10bfa *html/enrichedGO.html
a19136b77bb2d5d48a9d534ea6d2f72c *html/estFragmentLength.html
d648a3e08d65396e6ab0cd74232cc52a *html/estLibSize.html
7e37b855292134833accd8674a7e1391 *html/featureAlignedDistribution.html
d689d3d57241fe3642568ed5c0179c36 *html/featureAlignedExtentSignal.html
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d8c45939b429af6a066afaf97611b26c *html/featureAlignedSignal.html
5e1c47d587cd9ba8c8dd001cc789569d *html/findEnhancers.html
02de2f883fdad2a7027baa0814fb04fe *html/findOverlappingPeaks.html
e1c885990e311caa10261924e0a371d4 *html/findOverlapsOfPeaks.html
d3dcf042c9c24a096a836e0e5757ec94 *html/findVennCounts.html
4ebad72099dc13e2f6e8ebdc65f883eb *html/getAllPeakSequence.html
91b3b3c6c3c4b3fd62e2c5cd52975d13 *html/getAnnotation.html
a16cf1e5d2e03b11d3c94829388992b3 *html/getEnrichedGO.html
435764a1fba6e3ed8d06840099d52d7c *html/getEnrichedPATH.html
d4f11c53929a0ecfb820523721763654 *html/getGeneSeq.html
67d29d42f0d4766634c15d4d9e54fb7f *html/getUniqueGOidCount.html
b34888496c6dee1911dfb70c4476539b *html/getVennCounts.html
42722e1387e140461a01b9de075953d1 *html/hyperGtest.html
a9694b6ef59325bd00b8069aaa73b7b5 *html/makeVennDiagram.html
deeb61139f6e6301e9c134f581c3fed9 *html/mergePlusMinusPeaks.html
71e3be2a34fbd8f30f8f7848edd8fa82 *html/myPeakList.html
253a2c9caa156f3a1faf52a661e9720f *html/oligoFrequency.html
72a27d0ef4da1c70d0a7bce749c99796 *html/oligoSummary.html
bc14d844dc53d3f27f3098fab3104aed *html/peakPermTest.html
e950ee888d0e685df3670e6e3bfe1ff5 *html/peaksNearBDP.html
dfdd6ee07e71c074256ce6c053639141 *html/permPool.html
472446cea151d446b0195b97ffec80ae *html/pie1.html
728f3852daf9fdd3cf8ceda0788a0a74 *html/plotBinOverRegions.html
285931a294968d1a16fa4fed95a12025 *html/preparePool.html
4ecd699eabacff056c4ee2ef9276b14b *html/reCenterPeaks.html
9b8339f9757f3873c5e292cdd027b4a6 *html/summarizeOverlapsByBins.html
6a11e535cb24793631514d6c805fcca7 *html/summarizePatternInPeaks.html
4485f72fe7dd7613d9dba732f589117c *html/tileCount.html
8f2ee339c42948eb0b9a4b2319078b30 *html/tileGRanges.html
1061f427fb52ce927580fd58de75fe21 *html/toGRanges.html
4afbeb409cc8e500f660d85e51ff1bab *html/translatePattern.html
70d6714e0008e8b95609b126fecf82e2 *html/wgEncodeTfbsV3.html
f17a3dd1d0cce799792cd17b7b81e599 *html/write2FASTA.html
473b005f4dd58bee7dc3fe7170d012b0 *html/xget.html
