1db56b4e96be4c465108f76b173ae285 *DESCRIPTION
6266cd4977f900afcaf6a175785cdeff *INDEX
31bd80c13ee557ad04eec62784b78e55 *Meta/Rd.rds
8fd50f2ca037376f9a5e52249f6ff06a *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
d7134205ab811acc1b2ee2423ee0aa8f *Meta/hsearch.rds
4451d2d1baa78e7bca5754843f3d7f19 *Meta/links.rds
485ef5d2390db4a05406737fdf205635 *Meta/nsInfo.rds
faaa46ce6d1ca6074df98b9f03d77b07 *Meta/package.rds
fbd3912b82ea701c693a5130d49db130 *Meta/vignette.rds
f22c792c43684d8f72784c7dc6e5d3d3 *NAMESPACE
2ab266dc2d43775aa14ad711d1b68d78 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPSeqSpike
a49985abcb0cb2d6afdd063e40594a75 *R/ChIPSeqSpike.rdb
f0adef0b01d724adec5850356897c8ad *R/ChIPSeqSpike.rdx
b25a6ef65708280681dd50fb7c27dfae *data/datalist
fade11720c5a57972e754b0f82ffc2bc *data/ratio.RData
798d46e8bbbc03aabeed3d10bd64ed9a *data/result_estimateScalingFactors.RData
509e53f9726711bcc54a026b819831f7 *data/result_extractBinding.RData
6e45b4d0099ed5c86a167e0ffd69865b *doc/ChIPSeqSpike.R
5b05e393cf652375d4bab055c4ecd4c8 *doc/ChIPSeqSpike.Rmd
df6979034821828bb435ba1d3c78c3bb *doc/ChIPSeqSpike.pdf
0e47348204dd0833c3e9601098464a29 *doc/index.html
e1b0857cfa8b9dcb2985422937745d31 *extdata/bam_files/H3K79me2_0_dm3-filtered.bam
b68ec110a950b71a3b13baa15a5dec0a *extdata/bam_files/H3K79me2_0_hg19-filtered.bam
e59bb25fde9cda6353c2d9bbcabcaa3e *extdata/bam_files/H3K79me2_100_dm3-filtered.bam
80bd8e48d6dcda4d760ac1602c31cf9e *extdata/bam_files/H3K79me2_100_hg19-filtered.bam
d6725b83c9229d109a291c3e4b984e7c *extdata/bam_files/H3K79me2_50_dm3-filtered.bam
f3c641290c9b4376058edf23eb6f72ae *extdata/bam_files/H3K79me2_50_hg19-filtered.bam
b2e75b31f0316749aa36a3d9b7c4a761 *extdata/bam_files/input_0_hg19-filtered.bam
8b8148adb9f17d2736a37afedd48a7d6 *extdata/bam_files/input_100_hg19-filtered.bam
7673e3b31cb43524e138b75c1e159cbf *extdata/bam_files/input_50_hg19-filtered.bam
87573393051fa168552ed7cb39dfe7ef *extdata/bigwig_files/H3K79me2_0-filtered.bw
b39be71651fa682c7ca5e74471b99356 *extdata/bigwig_files/H3K79me2_100-filtered.bw
9484358670dca7886ac5c6b183633858 *extdata/bigwig_files/H3K79me2_50-filtered.bw
8a9d30626ddffebcfcb53d73f109debe *extdata/bigwig_files/input_0-filtered.bw
bf1a116f02a8b755d2090aefccd66726 *extdata/bigwig_files/input_100-filtered.bw
3b9df7633e8119547fcd288983cec485 *extdata/bigwig_files/input_50-filtered.bw
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/endoBam_empty.bam
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/exoBam_empty.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/input.wig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.wig
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wig.file_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty-RPM.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty.bw
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/endo.fa
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/exo.fa
54b6999818010f2f7cb7bd8dec20bbe1 *extdata/fastq_fasta_files/reads1.fastq.gz
4ef102a93caa7e70a8bad42948847a75 *extdata/fastq_fasta_files/reads2.fastq.gz
a009a7951861bd4ba706d2ef0111e2b4 *extdata/info.csv
fdbd4dfbae936b378365d7e043376e5a *extdata/test_coord.gff
1d9f6c9669202dd4a146d02723e429c9 *help/AnIndex
941555f58dcb8857a250bd4fdb5e0d83 *help/ChIPSeqSpike.rdb
7232a90de2bb60da5a55d2419e23f5b6 *help/ChIPSeqSpike.rdx
bc4db204c27ddc8118357d3ab2d5524f *help/aliases.rds
cd3b0ada2e29897bf0a8f40b5e7edcf2 *help/paths.rds
6f3c30cf55b7b7ac2c99ae8db97e13bc *html/00Index.html
a253074f586edbaa92206452c8b840ef *html/ChIPSeqSpikeCore.html
7afb9e86389bf6202e0e2aa9c354e88d *html/ChIPSeqSpikeDataset-class.html
f00146d8fdad5bf3fdb7cea8ed3b893c *html/ChIPSeqSpikeDatasetBoost-class.html
e3e309674d9cf8a7254e1c7d238fc6d4 *html/ChIPSeqSpikeDatasetList-class.html
c9510f72ac48d8e18ebe20a4c969305f *html/ChIPSeqSpikeDatasetListBoost-class.html
f4b222049a1ee8774c7d5a129a2d9e38 *html/Experiment-class.html
cca5596eff11cb378ec2e042fd89a5e5 *html/ExperimentLoaded-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1cc06fca69e20cffa4120a30b5ee21c7 *html/averageBindingValues.html
a8ccf42985c90238476ec4922194a676 *html/bigWigFile.html
172b51142980370f82a44d280acc3443 *html/boxplotSpike.html
c019f86ad5f589c8ff869d7e222f9f39 *html/count.html
4656494c9d45430e4d25587b7c70053f *html/datasetList.html
45bc494e99dfc211c7a9f3b6304add8b *html/estimateScalingFactors.html
ed74e9b6d930afd182339ebe84dadc2c *html/exoCount.html
36cb3760b690c6201fb61392d20b4822 *html/exogenousScalingFactor.html
07b47aba41ee46832a4c1d2f004653df *html/experimentList.html
479eaa84660ac7e1453742adde258f90 *html/exportBigWigs.html
1fbd81f12c2ccba022c857828d2382f0 *html/extractBinding.html
e4679f3d798eaa3d597acf6ff7c76c61 *html/getAverageBindingValues.html
14e1d4eebf49ab1122941b1641afa128 *html/getBam.html
4b4f16cdda645bad59ace45f8645acbc *html/getBigWigFile.html
ab04d4280d6438b411da27496feb2b24 *html/getCount.html
85ede81693488c01d423a4ea87b78923 *html/getDatasetList.html
eb7c4b49ca120065e04a8682c75166c5 *html/getExoCount.html
ec32d3deba77d290b48b08a8b965e031 *html/getExogenousBam.html
77ba1ed3e09fe7d7a8e83083dbce0978 *html/getExogenousScalingFactor.html
1a91653016549b091d321da073ef6b59 *html/getExpName.html
b437bd6c532d1ae74579939514a83687 *html/getExperimentList.html
dcfe5386aa550e9ae25cae5cb2e81f5c *html/getExperimentListBigWigs.html
b617aa66bba5e89b56d006f27666ea3b *html/getLoadedData.html
ce07bd692ef41b9ccb77a6542bc7a99c *html/getMatBindingValues.html
45b762263eab7abe4211370510870930 *html/getRatio.html
6dad6c471c66e32a691869d10f90b535 *html/getScalingFactor.html
ea51314e53803941eb21c66ca574b963 *html/inputSubtraction.html
70da710211793447cbcb99ea081d7eac *html/matBindingValues.html
c28fe20e90293eaf34801c9d9d8d06db *html/plotCor.html
cf39bffa8d0556ca597794d4f8dfd75c *html/plotHeatmaps.html
80f3122c1a1c83b81675fb9634690226 *html/plotProfile.html
c362d9d5145ec9c01ca48a8fb377ba14 *html/plotTransform.html
2913b53ba24ba2add6cf3dc903b549ec *html/ratio.html
1354aa0710b54ed71ccdd6e24948df2a *html/result_data.html
ff2cb2ded20a09be44d7cc221a87788c *html/scaling.html
64dc81f887457e03149c043ffcf91c27 *html/scalingFactor.html
bd8b3ac6558bbe5bb8dee4b5b67c1ee9 *html/spikeDataset.html
1453552fefaa248856b5cbab4cd90396 *html/spikePipe.html
01607c4da0e4f716d954a13f46d44800 *html/spikeSummary.html
