inputFiles {CAGEr} | R Documentation

## Extracting paths to input files from CAGEr objects

### Description

Extracts the paths to CAGE data input files from `CAGEset` and `CAGEexp` objects.

### Usage

    inputFiles(object)

    ## S4 method for signature 'CAGEset'
    inputFiles(object)

    ## S4 method for signature 'CAGEexp'
    inputFiles(object)

    inputFiles(object) <- value

    ## S4 replacement method for signature 'CAGEset'
    inputFiles(object) <- value

    ## S4 replacement method for signature 'CAGEexp'
    inputFiles(object) <- value

### Arguments

`object` | A CAGEset or CAGEexp object.
`value` | A character vector with one file path per sample.

### Value

Returns a character vector of paths to CAGE data input files.

### Author(s)

Vanja Haberle

Charles Plessy

### See Also

Other CAGEr accessor methods: `CTSSclusteringMethod`, `CTSScoordinates`, `CTSScumulativesTagClusters`, `CTSSnormalizedTpm`, `CTSStagCountTable`, `CTSStagCount`, `GeneExpDESeq2`, `GeneExpSE`, `consensusClustersGR`, `genomeName`, `inputFilesType`, `librarySizes`, `sampleLabels`, `seqNameTotalsSE`, `tagClusters`

Other CAGEr setter methods: `genomeName`, `inputFilesType`, `sampleLabels`, `setColors`

### Examples

    inputFiles(exampleCAGEset)

[Package CAGEr version 1.28.0 Index]