consensusClustersQuantile {CAGEr} | R Documentation

## Quantile metadata stored in CAGEr objects.

### Description

Accessors for consensus cluster quantile data in CAGEr objects.

### Usage

    consensusClustersQuantileLow(object, samples = NULL)

    ## S4 method for signature 'CAGEset'
    consensusClustersQuantileLow(object, samples = NULL)

    ## S4 method for signature 'CAGEexp'
    consensusClustersQuantileLow(object, samples = NULL)

    consensusClustersQuantileUp(object, samples = NULL)

    ## S4 method for signature 'CAGEset'
    consensusClustersQuantileUp(object, samples = NULL)

    ## S4 method for signature 'CAGEexp'
    consensusClustersQuantileUp(object, samples = NULL)

    consensusClustersQuantile(object, sample = NULL, q)

    ## S4 method for signature 'CAGEset'
    consensusClustersQuantile(object, sample = NULL, q)

    ## S4 method for signature 'CAGEexp'
    consensusClustersQuantile(object, sample = NULL, q)

    consensusClustersQuantileLow(object, samples = NULL) <- value

    ## S4 replacement method for signature 'CAGEset'
    consensusClustersQuantileLow(object,
      samples = NULL) <- value

    consensusClustersQuantileUp(object, samples = NULL) <- value

    ## S4 replacement method for signature 'CAGEset'
    consensusClustersQuantileUp(object,
      samples = NULL) <- value

### Arguments

`object` | A `CAGEr` object.
`samples` | Sample name(s), number(s) or `NULL` (default) for all samples.
`sample` | A single sample name or number, or `NULL` (default) for all samples.
`q` | A quantile.
`value` | A list (one entry per sample) of data frames with multiple columns: `cluster` for the cluster ID, and then `q_0.n` where `0.n` indicates a quantile.

[Package CAGEr version 1.28.0 Index]