90f2fd9569ff1ab9a9e85c771e0dce40 *CITATION
c7d69e99cf2f32c1664596c2776987a1 *DESCRIPTION
bd45fc3aec4743bd42949f7d5d483ad4 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
a541ce1e54a02b3064a010e6da37e70e *Meta/Rd.rds
7ed51ee845ea31af2f05b3fc7f23eebf *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
12f16269ae3eb0c242abaea18f934f98 *Meta/hsearch.rds
2b6d5404f136a0b1b7b9d12b2d4ba5df *Meta/links.rds
2b19a09132dcb8c51c77317bdcf5b993 *Meta/nsInfo.rds
e5ad26e5c49dd289cf08e31d2b84db02 *Meta/package.rds
38ba3df489f75cb37cefe73065ce34a3 *Meta/vignette.rds
76627abb2c21d3741ca0d04ec3f67e46 *NAMESPACE
c7b658cc58f537d4823a4ae29c432a8f *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CAGEfightR
cda2ec5723788819118885eb8ab3c333 *R/CAGEfightR.rdb
316a9d4d2d8730f93133da2e311e0519 *R/CAGEfightR.rdx
81104338a2e3c9aca2bcea4f97128ec7 *data/Rdata.rdb
61c6ae47d15d06027c5fae2ca47e7854 *data/Rdata.rds
817aac8cfa1aa1e68b5da9d025f89da1 *data/Rdata.rdx
3d835136ec57ae76d46590f1076e8154 *data/datalist
743300a472ddc61f255d237d792f8a48 *doc/Introduction_to_CAGEfightR.R
51ef75e2f8ce7f60e40795e39713a9e3 *doc/Introduction_to_CAGEfightR.Rmd
ec1769452fe2afc9f339bc57a01b5f69 *doc/Introduction_to_CAGEfightR.html
3868bb4ec18148ed55d531bbe816e5e3 *doc/index.html
d1addb1b161c5d2d029a54dbf03aba45 *extdata/mm9.C547.minus.bw
12abbe7c0e853f44d353c3f819055f32 *extdata/mm9.C547.plus.bw
4c3a45077f5ecf6e93427c4800a0085d *extdata/mm9.C548.minus.bw
56befdc837745f8b2a5811e3ea94f8b0 *extdata/mm9.C548.plus.bw
246381ce67e76f4f772af9406fddd109 *extdata/mm9.C549.minus.bw
ac58aa74ba527e06166c70747ab63537 *extdata/mm9.C549.plus.bw
44c7a8ee9309507ee2612320a5dee4ff *help/AnIndex
80ceb83cbc91abcaabc0e1ac0bbfe6c7 *help/CAGEfightR.rdb
91eef09b52c65d53d83a92d1732356ce *help/CAGEfightR.rdx
7df6cdb961de99b6b9fbbbc34d135332 *help/aliases.rds
939b9a06e5f20d78b57106dbca2c0af9 *help/paths.rds
68d0197f22938bb6899f1cfb92444613 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
360ab5b8a17d12b726f37b3017fae62e *html/assignGeneID.html
e21d40a069abdda9a059d54cfe56fc0d *html/assignMissingID.html
ddc32dc8d824f8f0b05038fe4f19b380 *html/assignTxID.html
56a9cab5d971e350fb9c287d4e9d98de *html/assignTxType.html
6755ffe9915d04304d2f11229e60281b *html/balanceBC.html
d0b71949121bde44785409dc4719e21c *html/balanceD.html
1f4a6b3dbd9f46a313baac3c253172f0 *html/bwCommonGenome.html
f180a8be1303e0b5f40766c1869840e7 *html/bwGenomeCompatibility.html
0d4e52d2d9fb0fcec0cc4ee5fe060e4c *html/bwValid.html
09f0771a8b0f170b688d39c30c04f8e6 *html/calcBidirectionality.html
d090087b5e07ecbe549e8b7c1663b4b8 *html/calcComposition.html
d6e1a1cd45b02546b883dc7d02dee4c5 *html/calcPooled.html
58888d8082e5855d72e3c8f826e64bcd *html/calcShape.html
4e39d4d74807cff3b56a080a5b9b0834 *html/calcSupport.html
cfee36803c5b95bdad137153ec0a38a0 *html/calcTPM.html
7695bc051090465b5b97d8c9e3f18322 *html/calcTotalTags.html
8b609ee4c53e38747c50e089b2276ec2 *html/checkPeaked.html
3237ace235439c402f7a5cef637c6a93 *html/checkPooled.html
1ff76934f8facd2b376535838479ef2d *html/clusterBidirectionally.html
ae51cb62acdfb1dde79135ec6685fc5e *html/clusterUnidirectionally.html
e56c59d65ab9fd255c545423babe1b87 *html/combineClusters.html
34f8ffbdc6619255b6dd4243620dfb5b *html/exampleDesign.html
505a107f02c89643530c34f12044cde3 *html/findLinks.html
c2c70ccdc9b15ceb6f006decbad9dc51 *html/findStretches.html
29f77dcff355703580d2cbc7b171eddc *html/quantifyCTSSs.html
4755079408342f0e762e35e59b5cc00e *html/quantifyClusters.html
375dacb3c2baf7c8dec1ac35728e9649 *html/quantifyGenes.html
d9c9223268385b200303e45e915659af *html/quickEnhancers.html
4fbd92849f1973e22922bce9a90ec9b7 *html/quickTSSs.html
e485116cade7a52ab8de5a60421212e3 *html/shapeEntropy.html
d2d3e422c88eaf711e4815614781b674 *html/shapeIQR.html
e23028df5bc264228403d055102a3911 *html/shapeMultimodality.html
eb26c82cbcb06a5afd64feb89e88dfc1 *html/subsetByBidirectionality.html
2b2edc0b2f414be902c3f6f086663ee1 *html/subsetByComposition.html
ddd92f5f037a7677e0883426e0ac2053 *html/subsetBySupport.html
ed4a37d3dc726aac14add28894151787 *html/swapRanges.html
d5ea450fc28c334041520fb5775fcfa6 *html/swapScores.html
8e844cc4c0310b695ec0ab756cc74865 *html/trackBalance.html
fbeba46893a0ce7970a02b4da1f4da32 *html/trackCTSS.html
de36e5b412a96af1cddef69692a8babe *html/trackClusters.html
22accc91996a0f0d7435af1650fad2ab *html/trackLinks.html
7ed539f78cfa126bd619477115938e8b *html/trimToPeak.html
9c444946d9056197a505f33442558c45 *html/trimToPercentiles.html
233d3ab000665fee6219642c4123fdce *html/tuneTagClustering.html
