CAFE_data {CAFE} | R Documentation

## CAFE data set

### Description

Contains the dataset of GSE6561 and GSE10809 processed by `ProcessCels`

### Usage

    data("CAFE_data")

### Format

A list containing two lists

`whole`

  A list containing a dataframe for each sample

`over`

  A list containing a dataframe for each sample, but with only those probes that are deemed overexpressed

The dataframes inside the lists contain the following columns:

`ID`

  Affymetrix probe IDs

`Sym`

  Gene symbols

`Value`

  Log2 transformed expression values

`LogRel`

  Log2 transformed relative expression values (to the median)

`Loc`

  Chromosomal locations

`Chr`

  Chromosome identifiers

### Source

GSE6561: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6561

GSE10809: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10809

### Examples

    data("CAFE_data")

[Package CAFE version 1.22.0 Index]