oncoPrintISB {BiocOncoTK} | R Documentation

## interactive interface to ComplexHeatmap oncoPrint with inputs from ISB Cancer Genomics Cloud BigQuery back end

### Description

interactive interface to ComplexHeatmap oncoPrint with inputs from ISB Cancer Genomics Cloud BigQuery back end

### Usage

    oncoPrintISB(bq)

### Arguments

`bq` | an instance of `BigQueryConnection-class` authenticated for ISB Cancer Genomics Cloud access

### Value

only used for side effect of running shiny app

### Note

This function will start a shiny app and will generate queries to Google BigQuery tables representing TCGA.

### Examples

    if (interactive()) {
     bcode = Sys.getenv("CGC_BILLING")
     if (nchar(bcode)>0) {
      con <- DBI::dbConnect(bigrquery::bigquery(), project = "isb-cgc",
           dataset = "tcga_201607_beta", billing = bcode)
      oncoPrintISB(con)
     }
    }

[Package BiocOncoTK version 1.5.1 Index]