plot_Ic_Simulation {BioTIP} | R Documentation

## line plot of Ic score and simulated Ic scores

### Description

generate a line plot of Ic score and simulated Ic scores.

### Usage

    plot_Ic_Simulation(Ic, simulation, las = 0, ylim = NULL,
      order = NULL, main = NULL)

### Arguments

`Ic` | A vector with names of states. If order is not assigned, then plot by the order of this vector.
`simulation` | A numeric matrix of Ic scores in which rows are states and columns are numbers of simulated times. It can be obtained from `simulation_Ic`
`las` | Numeric in 0,1,2,3; the style of axis labels. Default is 0, meaning labels are parallel. (link to http://127.0.0.1:21580/library/graphics/html/par.html)
`ylim` | An integer vector of length 2. Default is NULL.
`order` | A vector of state names in the customized order to be plotted, set to NULL by default.
`main` | A character vector. The title of the plot. Defualt is NULL.

### Value

Return a line plot of Ic(red) and simulated Ic(grey) scores across all states

### Author(s)

Zhezhen Wang zhezhen@uchicago.edu

### Examples

    sim = matrix(sample(1:10,9),3,3)
    row.names(sim) = paste0('state',1:3)
    Ic = c('state1' = 3.4,'state2' = 5.6,'state3' = 2)
    plot_Ic_Simulation(Ic,sim)

[Package BioTIP version 1.0.0 Index]