plot_MCI_Simulation {BioTIP} | R Documentation

## Simulation of Loci to Calculate the CI Score

### Description

simulation of loci to calculate the Ic score.

### Usage

    plot_MCI_Simulation(MCI, simulation, las = 0, order = NULL,
      ylim = NULL, main = NULL)

### Arguments

`MCI` | A named vector of max CI scores per state, can be obtained from function `getMaxStats`
`simulation` | A matrix state * number of simulated times, can be obtained from function `simulationMCI`
`las` | Numeric in 0,1,2,3; the style of axis labels. Default is 0, meaning labels are parallel. (link to http://127.0.0.1:21580/library/graphics/html/par.html)
`order` | A vector of state names in the customized order to be plotted, set to NULL by default.
`ylim` | An integer vector of length 2. Default is NULL.
`main` | A character vector. The title of the plot. Defualt is NULL.

### Value

Return a line plot of MCI(red) and simulated MCI(grey) scores across all states

### Author(s)

Zhezhen Wang zhezhen@uchicago.edu

### Examples

    MCI = c(1:3); names(MCI) = c('a','b','c')
    simMCI = matrix(sample(1:100,9),3,3)
    row.names(simMCI) = names(MCI)
    plot_MCI_Simulation(MCI,simMCI)

[Package BioTIP version 1.0.0 Index]