BCRANKmatch-class {BCRANK} | R Documentation

## Class "BCRANKmatch"

### Description

Holds the `bcrank` score for one IUPAC consensus sequence. Several objects of this class are collected in a `BCRANKsearch-class` object

### Objects from the Class

Objects are not intended to be created directly but as a result from running `bcrank`.

### Slots

`consensus`:

  consensus sequence in IUPAC coding

`bcrankScore`:

  bcrank score for the consensus

`matchVec`:

  vector with 0's (no match) and 1's (match) of same length as the ranked DNA sequences

### Methods

consensus

  `signature(object = "BCRANKmatch")`: Returns the consensus sequence.

bcrankScore

  `signature(object = "BCRANKmatch")`: Returns the bcrank score.

matchVector

  `signature(object = "BCRANKmatch")`: Returns a vector with 0's (no match) and 1's (match) of same length and order as the ranked DNA sequences.

### Author(s)

Adam Ameur, adam.ameur@genpat.uu.se

### See Also

`bcrank`, `BCRANKsearch-class`

[Package BCRANK version 1.48.0 Index]