Autotuner-class {Autotuner} | R Documentation

## Autotuner

### Description

This file contains the skeleton to the Autotuner class used through out Autoutuner.

This object is a generic object designed to run the different functions of the ms2sweeper package. The slots represent content or data that the package uses throughout the different functions.

Autouner object used to test functions contained within the package. The content of this object was made using the mmetspData package.

### Format

An Autotuner object

### Slots

`time`

  A list containing vectors of scan time points from each sample.

`intensity`

  A list containing vectors of scan intensity points from each sample.

`peaks`

  Regions within each sample identified as peaks by slidingwindow analysis.

`peak_table`

  A data.frame containing information on each peak after further processing is done to the data.

`peak_difference`

  A data.frame containing information on how peaks are eluted differently over time.

`metadata`

  A data.frame containing metadata for all samples to be run on Autotuner.

`file_paths`

  A string path that leads to the samples to be run on Autotuner.

`file_col`

  A string for the column name of the column within the metadata that has specific sample names.

`factorCol`

  A string for the column name of the column within the metadata that has specific sample class names.

### Source

inst/script/makeTestData.R

[Package Autotuner version 1.0.1 Index]